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Cluster: HRGMv2_2283_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2283_8 HRGMv2_2283_8_20 19164 20981 - GT2
CAZyme HRGMv2_2283_8 HRGMv2_2283_8_21 20983 22779 - GT2
TC HRGMv2_2283_8 HRGMv2_2283_8_22 22799 23539 - 3.A.1.103.1
TC HRGMv2_2283_8 HRGMv2_2283_8_23 23551 24339 - 3.A.1.103.6
CAZyme HRGMv2_2283_8 HRGMv2_2283_8_24 24364 25368 - GT2
CAZyme HRGMv2_2283_8 HRGMv2_2283_8_25 25500 26501 - GT2
pfam HRGMv2_2283_8 HRGMv2_2283_8_26 26967 28082 - DUF362
pfam HRGMv2_2283_8 HRGMv2_2283_8_27 28126 29325 - MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_2283_8 HRGMv2_2283_8_28 29344 30510 - 3.A.4.1.2
TC HRGMv2_2283_8 HRGMv2_2283_8_29 30507 31715 - 3.A.4.1.2
Gene ID: HRGMv2_2283_8_20
Type: CAZyme
Location: 19164 - 20981 (-)
Gene ID: HRGMv2_2283_8_21
Type: CAZyme
Location: 20983 - 22779 (-)
Gene ID: HRGMv2_2283_8_22
Type: TC
Location: 22799 - 23539 (-)
Gene ID: HRGMv2_2283_8_23
Type: TC
Location: 23551 - 24339 (-)
Gene ID: HRGMv2_2283_8_24
Type: CAZyme
Location: 24364 - 25368 (-)
Gene ID: HRGMv2_2283_8_25
Type: CAZyme
Location: 25500 - 26501 (-)
Gene ID: HRGMv2_2283_8_26
Type: pfam
Location: 26967 - 28082 (-)
Gene ID: HRGMv2_2283_8_27
Type: pfam
Location: 28126 - 29325 (-)
Gene ID: HRGMv2_2283_8_28
Type: TC
Location: 29344 - 30510 (-)
Gene ID: HRGMv2_2283_8_29
Type: TC
Location: 30507 - 31715 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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