dbCAN Logo

Cluster: HRGMv2_2283_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2283_5 HRGMv2_2283_5_17 13227 15806 - GT51
pfam HRGMv2_2283_5 HRGMv2_2283_5_18 15951 16598 + UPF0029 | DUF1949
TC HRGMv2_2283_5 HRGMv2_2283_5_19 16698 17525 + 3.A.1.3.15
TC HRGMv2_2283_5 HRGMv2_2283_5_20 17542 18255 + 3.A.1.3.15
TC HRGMv2_2283_5 HRGMv2_2283_5_21 18242 18967 + 3.A.1.3.25
TF HRGMv2_2283_5 HRGMv2_2283_5_22 19048 19899 - HTH_AraC | HTH_AraC
STP HRGMv2_2283_5 HRGMv2_2283_5_23 20114 21397 + SBP_bac_1
TC HRGMv2_2283_5 HRGMv2_2283_5_24 21417 22292 + 3.A.1.1.28
TC HRGMv2_2283_5 HRGMv2_2283_5_25 22292 23128 + 3.A.1.1.28
CAZyme HRGMv2_2283_5 HRGMv2_2283_5_26 23145 25328 + GH36
CAZyme HRGMv2_2283_5 HRGMv2_2283_5_27 25335 26972 + GH13_31
pfam HRGMv2_2283_5 HRGMv2_2283_5_28 26975 28144 + GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg
pfam HRGMv2_2283_5 HRGMv2_2283_5_29 28179 29708 + GalP_UDP_transf | GalP_UDP_tr_C
TC HRGMv2_2283_5 HRGMv2_2283_5_30 29740 30837 + 3.A.1.1.22
CAZyme HRGMv2_2283_5 HRGMv2_2283_5_31 30907 32784 + GH13_4
Gene ID: HRGMv2_2283_5_17
Type: CAZyme
Location: 13227 - 15806 (-)
Gene ID: HRGMv2_2283_5_18
Type: pfam
Location: 15951 - 16598 (+)
Gene ID: HRGMv2_2283_5_19
Type: TC
Location: 16698 - 17525 (+)
Gene ID: HRGMv2_2283_5_20
Type: TC
Location: 17542 - 18255 (+)
Gene ID: HRGMv2_2283_5_21
Type: TC
Location: 18242 - 18967 (+)
Gene ID: HRGMv2_2283_5_22
Type: TF
Location: 19048 - 19899 (-)
Gene ID: HRGMv2_2283_5_23
Type: STP
Location: 20114 - 21397 (+)
Gene ID: HRGMv2_2283_5_24
Type: TC
Location: 21417 - 22292 (+)
Gene ID: HRGMv2_2283_5_25
Type: TC
Location: 22292 - 23128 (+)
Gene ID: HRGMv2_2283_5_26
Type: CAZyme
Location: 23145 - 25328 (+)
Gene ID: HRGMv2_2283_5_27
Type: CAZyme
Location: 25335 - 26972 (+)
Gene ID: HRGMv2_2283_5_28
Type: pfam
Location: 26975 - 28144 (+)
Gene ID: HRGMv2_2283_5_29
Type: pfam
Location: 28179 - 29708 (+)
Gene ID: HRGMv2_2283_5_30
Type: TC
Location: 29740 - 30837 (+)
Gene ID: HRGMv2_2283_5_31
Type: CAZyme
Location: 30907 - 32784 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List