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Cluster: HRGMv2_2283_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2283_42 HRGMv2_2283_42_2 1265 2872 + 3.A.1.5.28
TC HRGMv2_2283_42 HRGMv2_2283_42_3 3008 3967 + 3.A.1.5.20
TC HRGMv2_2283_42 HRGMv2_2283_42_4 3985 4872 + 3.A.1.5.20
TC HRGMv2_2283_42 HRGMv2_2283_42_5 4884 5912 + 3.A.1.5.12
TC HRGMv2_2283_42 HRGMv2_2283_42_6 5914 6933 + 3.A.1.5.20
pfam HRGMv2_2283_42 HRGMv2_2283_42_7 6930 7382 + DUF386
pfam HRGMv2_2283_42 HRGMv2_2283_42_8 7412 8329 + DHDPS
CAZyme HRGMv2_2283_42 HRGMv2_2283_42_9 8358 9812 + GH165
CAZyme HRGMv2_2283_42 HRGMv2_2283_42_10 9812 10969 + CE9
pfam HRGMv2_2283_42 HRGMv2_2283_42_11 11056 11787 - MgtC
TC HRGMv2_2283_42 HRGMv2_2283_42_12 11809 13269 - 2.A.37.3.3
Gene ID: HRGMv2_2283_42_2
Type: TC
Location: 1265 - 2872 (+)
Gene ID: HRGMv2_2283_42_3
Type: TC
Location: 3008 - 3967 (+)
Gene ID: HRGMv2_2283_42_4
Type: TC
Location: 3985 - 4872 (+)
Gene ID: HRGMv2_2283_42_5
Type: TC
Location: 4884 - 5912 (+)
Gene ID: HRGMv2_2283_42_6
Type: TC
Location: 5914 - 6933 (+)
Gene ID: HRGMv2_2283_42_7
Type: pfam
Location: 6930 - 7382 (+)
Gene ID: HRGMv2_2283_42_8
Type: pfam
Location: 7412 - 8329 (+)
Gene ID: HRGMv2_2283_42_9
Type: CAZyme
Location: 8358 - 9812 (+)
Gene ID: HRGMv2_2283_42_10
Type: CAZyme
Location: 9812 - 10969 (+)
Gene ID: HRGMv2_2283_42_11
Type: pfam
Location: 11056 - 11787 (-)
Gene ID: HRGMv2_2283_42_12
Type: TC
Location: 11809 - 13269 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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