Cluster: HRGMv2_2283_CGC13
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2283
- CGC Family ID: CGCFAM_02895
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2283_23 | HRGMv2_2283_23_20 | 17905 | 19656 | + | 3.A.1.135.5 |
| TC | HRGMv2_2283_23 | HRGMv2_2283_23_21 | 19649 | 21514 | + | 3.A.1.135.5 |
| pfam | HRGMv2_2283_23 | HRGMv2_2283_23_22 | 21822 | 23177 | - | AcetylCoA_hydro | AcetylCoA_hyd_C |
| STP | HRGMv2_2283_23 | HRGMv2_2283_23_23 | 23316 | 24482 | - | Aminotran_1_2 |
| CAZyme | HRGMv2_2283_23 | HRGMv2_2283_23_24 | 24500 | 25864 | - | AA4 |
| TC | HRGMv2_2283_23 | HRGMv2_2283_23_25 | 25870 | 26751 | - | 3.A.1.24.1 |
| TC | HRGMv2_2283_23 | HRGMv2_2283_23_26 | 26779 | 27450 | - | 3.A.1.24.6 |
| TC | HRGMv2_2283_23 | HRGMv2_2283_23_27 | 27443 | 28477 | - | 3.A.1.24.6 |
| TF | HRGMv2_2283_23 | HRGMv2_2283_23_28 | 28644 | 29549 | - | HTH_1 |
| TC | HRGMv2_2283_23 | HRGMv2_2283_23_29 | 29549 | 30955 | - | 2.A.25.1.4 |
| pfam | HRGMv2_2283_23 | HRGMv2_2283_23_30 | 31121 | 32383 | - | DegT_DnrJ_EryC1 | Cys_Met_Meta_PP |
| pfam | HRGMv2_2283_23 | HRGMv2_2283_23_31 | 32380 | 33294 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_2283_23 | HRGMv2_2283_23_32 | 33328 | 34050 | - | CE4 |
Gene ID: HRGMv2_2283_23_20
Type: TC
Location: 17905 - 19656 (+)
Type: TC
Location: 17905 - 19656 (+)
Gene ID: HRGMv2_2283_23_21
Type: TC
Location: 19649 - 21514 (+)
Type: TC
Location: 19649 - 21514 (+)
Gene ID: HRGMv2_2283_23_22
Type: pfam
Location: 21822 - 23177 (-)
Type: pfam
Location: 21822 - 23177 (-)
Gene ID: HRGMv2_2283_23_23
Type: STP
Location: 23316 - 24482 (-)
Type: STP
Location: 23316 - 24482 (-)
Gene ID: HRGMv2_2283_23_24
Type: CAZyme
Location: 24500 - 25864 (-)
Type: CAZyme
Location: 24500 - 25864 (-)
Gene ID: HRGMv2_2283_23_25
Type: TC
Location: 25870 - 26751 (-)
Type: TC
Location: 25870 - 26751 (-)
Gene ID: HRGMv2_2283_23_26
Type: TC
Location: 26779 - 27450 (-)
Type: TC
Location: 26779 - 27450 (-)
Gene ID: HRGMv2_2283_23_27
Type: TC
Location: 27443 - 28477 (-)
Type: TC
Location: 27443 - 28477 (-)
Gene ID: HRGMv2_2283_23_28
Type: TF
Location: 28644 - 29549 (-)
Type: TF
Location: 28644 - 29549 (-)
Gene ID: HRGMv2_2283_23_29
Type: TC
Location: 29549 - 30955 (-)
Type: TC
Location: 29549 - 30955 (-)
Gene ID: HRGMv2_2283_23_30
Type: pfam
Location: 31121 - 32383 (-)
Type: pfam
Location: 31121 - 32383 (-)
Gene ID: HRGMv2_2283_23_31
Type: pfam
Location: 32380 - 33294 (-)
Type: pfam
Location: 32380 - 33294 (-)
Gene ID: HRGMv2_2283_23_32
Type: CAZyme
Location: 33328 - 34050 (-)
Type: CAZyme
Location: 33328 - 34050 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Frisingicoccus
Species
Frisingicoccus sp902471845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.