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Cluster: HRGMv2_2281_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2281_21 HRGMv2_2281_21_22 22203 23147 + GT2
NULL(UNKNOWN) HRGMv2_2281_21 HRGMv2_2281_21_23 23346 23951 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2281_21 HRGMv2_2281_21_24 24218 24874 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2281_21 HRGMv2_2281_21_25 25097 25990 + 3.A.1.3.27
TC HRGMv2_2281_21 HRGMv2_2281_21_26 26028 26678 + 3.A.1.3.15
TC HRGMv2_2281_21 HRGMv2_2281_21_27 26691 27440 + 3.A.1.3.14
pfam HRGMv2_2281_21 HRGMv2_2281_21_28 27474 28457 - Zn_dep_PLPC
TC HRGMv2_2281_21 HRGMv2_2281_21_29 28643 30001 + 2.A.25.1.4
Gene ID: HRGMv2_2281_21_22
Type: CAZyme
Location: 22203 - 23147 (+)
Gene ID: HRGMv2_2281_21_23
Type:
Location: 23346 - 23951 (+)
Gene ID: HRGMv2_2281_21_24
Type:
Location: 24218 - 24874 (+)
Gene ID: HRGMv2_2281_21_25
Type: TC
Location: 25097 - 25990 (+)
Gene ID: HRGMv2_2281_21_26
Type: TC
Location: 26028 - 26678 (+)
Gene ID: HRGMv2_2281_21_27
Type: TC
Location: 26691 - 27440 (+)
Gene ID: HRGMv2_2281_21_28
Type: pfam
Location: 27474 - 28457 (-)
Gene ID: HRGMv2_2281_21_29
Type: TC
Location: 28643 - 30001 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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