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Cluster: HRGMv2_2281_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2281_7 HRGMv2_2281_7_48 55115 55930 - 3.A.1.1.34
TC HRGMv2_2281_7 HRGMv2_2281_7_49 55932 56795 - 3.A.1.1.4
TC HRGMv2_2281_7 HRGMv2_2281_7_50 56826 58112 - 3.A.1.1.34
CAZyme HRGMv2_2281_7 HRGMv2_2281_7_51 58365 61370 + GH2
TF HRGMv2_2281_7 HRGMv2_2281_7_52 61410 62417 + LacI
TC HRGMv2_2281_7 HRGMv2_2281_7_53 62527 63639 + 3.A.1.1.26
pfam HRGMv2_2281_7 HRGMv2_2281_7_54 63749 64906 + HTH_30 | GGDEF_2
TC HRGMv2_2281_7 HRGMv2_2281_7_55 64887 65585 + 9.B.28.1.2
Gene ID: HRGMv2_2281_7_48
Type: TC
Location: 55115 - 55930 (-)
Gene ID: HRGMv2_2281_7_49
Type: TC
Location: 55932 - 56795 (-)
Gene ID: HRGMv2_2281_7_50
Type: TC
Location: 56826 - 58112 (-)
Gene ID: HRGMv2_2281_7_51
Type: CAZyme
Location: 58365 - 61370 (+)
Gene ID: HRGMv2_2281_7_52
Type: TF
Location: 61410 - 62417 (+)
Gene ID: HRGMv2_2281_7_53
Type: TC
Location: 62527 - 63639 (+)
Gene ID: HRGMv2_2281_7_54
Type: pfam
Location: 63749 - 64906 (+)
Gene ID: HRGMv2_2281_7_55
Type: TC
Location: 64887 - 65585 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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