Cluster: HRGMv2_2279_CGC8
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2279
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2279_5 | HRGMv2_2279_5_44 | 38339 | 40108 | + | 8.A.59.2.1 |
| pfam | HRGMv2_2279_5 | HRGMv2_2279_5_45 | 40105 | 41007 | + | Peripla_BP_4 |
| TC | HRGMv2_2279_5 | HRGMv2_2279_5_46 | 41025 | 42044 | + | 3.A.1.2.3 |
| NULL(UNKNOWN) | HRGMv2_2279_5 | HRGMv2_2279_5_47 | 42192 | 43259 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2279_5 | HRGMv2_2279_5_48 | 43285 | 44151 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2279_5 | HRGMv2_2279_5_49 | 44383 | 48393 | + | GH3 |
| STP | HRGMv2_2279_5 | HRGMv2_2279_5_50 | 48524 | 49111 | - | HD |
| CAZyme | HRGMv2_2279_5 | HRGMv2_2279_5_51 | 49389 | 53687 | + | CBM6 | GH3 |
| CAZyme | HRGMv2_2279_5 | HRGMv2_2279_5_52 | 53868 | 56717 | + | CBM6 |
| pfam | HRGMv2_2279_5 | HRGMv2_2279_5_53 | 56885 | 57862 | + | GFO_IDH_MocA | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3 |
| pfam | HRGMv2_2279_5 | HRGMv2_2279_5_54 | 57872 | 58654 | + | TraX |
| TC | HRGMv2_2279_5 | HRGMv2_2279_5_55 | 58737 | 60107 | - | 2.A.40.7.2 |
| pfam | HRGMv2_2279_5 | HRGMv2_2279_5_56 | 60189 | 60467 | - | HicB_lk_antitox |
| TF | HRGMv2_2279_5 | HRGMv2_2279_5_57 | 60500 | 60925 | - | MerR |
| TC | HRGMv2_2279_5 | HRGMv2_2279_5_58 | 61067 | 62065 | + | 8.A.5.1.6 |
| TC | HRGMv2_2279_5 | HRGMv2_2279_5_59 | 62113 | 62832 | - | 9.B.143.2.3 |
| TC | HRGMv2_2279_5 | HRGMv2_2279_5_60 | 63176 | 64588 | + | 3.A.1.121.4 |
| TC | HRGMv2_2279_5 | HRGMv2_2279_5_61 | 64585 | 65334 | + | 9.B.158.1.1 |
Gene ID: HRGMv2_2279_5_44
Type: TC
Location: 38339 - 40108 (+)
Type: TC
Location: 38339 - 40108 (+)
Gene ID: HRGMv2_2279_5_45
Type: pfam
Location: 40105 - 41007 (+)
Type: pfam
Location: 40105 - 41007 (+)
Gene ID: HRGMv2_2279_5_46
Type: TC
Location: 41025 - 42044 (+)
Type: TC
Location: 41025 - 42044 (+)
Gene ID: HRGMv2_2279_5_47
Type:
Location: 42192 - 43259 (+)
Type:
Location: 42192 - 43259 (+)
Gene ID: HRGMv2_2279_5_48
Type:
Location: 43285 - 44151 (+)
Type:
Location: 43285 - 44151 (+)
Gene ID: HRGMv2_2279_5_49
Type: CAZyme
Location: 44383 - 48393 (+)
Type: CAZyme
Location: 44383 - 48393 (+)
Gene ID: HRGMv2_2279_5_50
Type: STP
Location: 48524 - 49111 (-)
Type: STP
Location: 48524 - 49111 (-)
Gene ID: HRGMv2_2279_5_51
Type: CAZyme
Location: 49389 - 53687 (+)
Type: CAZyme
Location: 49389 - 53687 (+)
Gene ID: HRGMv2_2279_5_52
Type: CAZyme
Location: 53868 - 56717 (+)
Type: CAZyme
Location: 53868 - 56717 (+)
Gene ID: HRGMv2_2279_5_53
Type: pfam
Location: 56885 - 57862 (+)
Type: pfam
Location: 56885 - 57862 (+)
Gene ID: HRGMv2_2279_5_54
Type: pfam
Location: 57872 - 58654 (+)
Type: pfam
Location: 57872 - 58654 (+)
Gene ID: HRGMv2_2279_5_55
Type: TC
Location: 58737 - 60107 (-)
Type: TC
Location: 58737 - 60107 (-)
Gene ID: HRGMv2_2279_5_56
Type: pfam
Location: 60189 - 60467 (-)
Type: pfam
Location: 60189 - 60467 (-)
Gene ID: HRGMv2_2279_5_57
Type: TF
Location: 60500 - 60925 (-)
Type: TF
Location: 60500 - 60925 (-)
Gene ID: HRGMv2_2279_5_58
Type: TC
Location: 61067 - 62065 (+)
Type: TC
Location: 61067 - 62065 (+)
Gene ID: HRGMv2_2279_5_59
Type: TC
Location: 62113 - 62832 (-)
Type: TC
Location: 62113 - 62832 (-)
Gene ID: HRGMv2_2279_5_60
Type: TC
Location: 63176 - 64588 (+)
Type: TC
Location: 63176 - 64588 (+)
Gene ID: HRGMv2_2279_5_61
Type: TC
Location: 64585 - 65334 (+)
Type: TC
Location: 64585 - 65334 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Hominisplanchenecus
Species
Hominisplanchenecus sp905214675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2279_5_57 | vegan > omnivore | 1.42469 | 0.01895 |