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Cluster: HRGMv2_2279_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2279_1 HRGMv2_2279_1_31 38574 39611 + GT2
CAZyme HRGMv2_2279_1 HRGMv2_2279_1_32 39624 40517 + GT2
pfam HRGMv2_2279_1 HRGMv2_2279_1_33 40522 41658 + Glycos_transf_1 | Glyco_trans_1_4
pfam HRGMv2_2279_1 HRGMv2_2279_1_34 41669 42751 + Epimerase_2
CAZyme HRGMv2_2279_1 HRGMv2_2279_1_35 42755 43834 + GH177
pfam HRGMv2_2279_1 HRGMv2_2279_1_36 43818 44393 + Hexapep | Hexapep_2 | Hexapep_2
STP HRGMv2_2279_1 HRGMv2_2279_1_37 44398 45528 + Aminotran_1_2
CAZyme HRGMv2_2279_1 HRGMv2_2279_1_38 45533 46735 + GT4
CAZyme HRGMv2_2279_1 HRGMv2_2279_1_39 46732 47517 + GT2
CAZyme HRGMv2_2279_1 HRGMv2_2279_1_40 47531 48226 + GT2
pfam HRGMv2_2279_1 HRGMv2_2279_1_41 48240 48614 + DUF2304
pfam HRGMv2_2279_1 HRGMv2_2279_1_42 48633 50291 + Flg_new_2 | Flg_new_2
TC HRGMv2_2279_1 HRGMv2_2279_1_43 50315 51157 + 1.E.12.1.3
Gene ID: HRGMv2_2279_1_31
Type: CAZyme
Location: 38574 - 39611 (+)
Gene ID: HRGMv2_2279_1_32
Type: CAZyme
Location: 39624 - 40517 (+)
Gene ID: HRGMv2_2279_1_33
Type: pfam
Location: 40522 - 41658 (+)
Gene ID: HRGMv2_2279_1_34
Type: pfam
Location: 41669 - 42751 (+)
Gene ID: HRGMv2_2279_1_35
Type: CAZyme
Location: 42755 - 43834 (+)
Gene ID: HRGMv2_2279_1_36
Type: pfam
Location: 43818 - 44393 (+)
Gene ID: HRGMv2_2279_1_37
Type: STP
Location: 44398 - 45528 (+)
Gene ID: HRGMv2_2279_1_38
Type: CAZyme
Location: 45533 - 46735 (+)
Gene ID: HRGMv2_2279_1_39
Type: CAZyme
Location: 46732 - 47517 (+)
Gene ID: HRGMv2_2279_1_40
Type: CAZyme
Location: 47531 - 48226 (+)
Gene ID: HRGMv2_2279_1_41
Type: pfam
Location: 48240 - 48614 (+)
Gene ID: HRGMv2_2279_1_42
Type: pfam
Location: 48633 - 50291 (+)
Gene ID: HRGMv2_2279_1_43
Type: TC
Location: 50315 - 51157 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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