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Cluster: HRGMv2_2277_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2277_1 HRGMv2_2277_1_348 377902 378732 - 3.A.1.1.41
TC HRGMv2_2277_1 HRGMv2_2277_1_349 378719 379636 - 3.A.1.1.7
TC HRGMv2_2277_1 HRGMv2_2277_1_350 379663 381012 - 3.A.1.1.44
STP HRGMv2_2277_1 HRGMv2_2277_1_351 381044 382135 - PfkB
TF HRGMv2_2277_1 HRGMv2_2277_1_352 382537 384090 - HTH_AraC
TC HRGMv2_2277_1 HRGMv2_2277_1_353 384083 385837 - 9.B.33.1.1
CAZyme HRGMv2_2277_1 HRGMv2_2277_1_354 385940 386917 - GH137
TC HRGMv2_2277_1 HRGMv2_2277_1_355 386911 387888 - 3.A.1.2.1
TC HRGMv2_2277_1 HRGMv2_2277_1_356 387864 388844 - 3.A.1.2.14
TC HRGMv2_2277_1 HRGMv2_2277_1_357 388861 390372 - 3.A.1.2.14
TC HRGMv2_2277_1 HRGMv2_2277_1_358 390401 391483 - 3.A.1.2.14
Gene ID: HRGMv2_2277_1_348
Type: TC
Location: 377902 - 378732 (-)
Gene ID: HRGMv2_2277_1_349
Type: TC
Location: 378719 - 379636 (-)
Gene ID: HRGMv2_2277_1_350
Type: TC
Location: 379663 - 381012 (-)
Gene ID: HRGMv2_2277_1_351
Type: STP
Location: 381044 - 382135 (-)
Gene ID: HRGMv2_2277_1_352
Type: TF
Location: 382537 - 384090 (-)
Gene ID: HRGMv2_2277_1_353
Type: TC
Location: 384083 - 385837 (-)
Gene ID: HRGMv2_2277_1_354
Type: CAZyme
Location: 385940 - 386917 (-)
Gene ID: HRGMv2_2277_1_355
Type: TC
Location: 386911 - 387888 (-)
Gene ID: HRGMv2_2277_1_356
Type: TC
Location: 387864 - 388844 (-)
Gene ID: HRGMv2_2277_1_357
Type: TC
Location: 388861 - 390372 (-)
Gene ID: HRGMv2_2277_1_358
Type: TC
Location: 390401 - 391483 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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