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Cluster: HRGMv2_2277_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2277_26 HRGMv2_2277_26_44 46300 47247 - 3.A.1.2.15
CAZyme HRGMv2_2277_26 HRGMv2_2277_26_45 47352 48791 - GH5_22
CAZyme HRGMv2_2277_26 HRGMv2_2277_26_46 48820 50934 - GH3
TC HRGMv2_2277_26 HRGMv2_2277_26_47 50953 51786 - 3.A.1.1.41
TC HRGMv2_2277_26 HRGMv2_2277_26_48 51788 52660 - 3.A.1.1.41
STP HRGMv2_2277_26 HRGMv2_2277_26_49 52742 54118 - SBP_bac_1
TF HRGMv2_2277_26 HRGMv2_2277_26_50 54338 55945 + HTH_AraC | HTH_AraC
TC HRGMv2_2277_26 HRGMv2_2277_26_51 55972 56787 + 8.A.59.2.1
TC HRGMv2_2277_26 HRGMv2_2277_26_52 56762 58183 + 3.A.1.2.15
Gene ID: HRGMv2_2277_26_44
Type: TC
Location: 46300 - 47247 (-)
Gene ID: HRGMv2_2277_26_45
Type: CAZyme
Location: 47352 - 48791 (-)
Gene ID: HRGMv2_2277_26_46
Type: CAZyme
Location: 48820 - 50934 (-)
Gene ID: HRGMv2_2277_26_47
Type: TC
Location: 50953 - 51786 (-)
Gene ID: HRGMv2_2277_26_48
Type: TC
Location: 51788 - 52660 (-)
Gene ID: HRGMv2_2277_26_49
Type: STP
Location: 52742 - 54118 (-)
Gene ID: HRGMv2_2277_26_50
Type: TF
Location: 54338 - 55945 (+)
Gene ID: HRGMv2_2277_26_51
Type: TC
Location: 55972 - 56787 (+)
Gene ID: HRGMv2_2277_26_52
Type: TC
Location: 56762 - 58183 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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