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Cluster: HRGMv2_2277_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2277_3 HRGMv2_2277_3_212 254278 255015 + 9.B.18.1.2
CAZyme HRGMv2_2277_3 HRGMv2_2277_3_213 255093 255863 + GT2
CAZyme HRGMv2_2277_3 HRGMv2_2277_3_214 255901 256800 + GT11
pfam HRGMv2_2277_3 HRGMv2_2277_3_215 256814 257878 + Glycos_transf_1 | Glyco_trans_1_4
CAZyme HRGMv2_2277_3 HRGMv2_2277_3_216 257891 258994 + GT4
pfam HRGMv2_2277_3 HRGMv2_2277_3_217 259081 260208 + Wzy_C
peptidase HRGMv2_2277_3 HRGMv2_2277_3_218 260228 262087 + C44.001
CAZyme HRGMv2_2277_3 HRGMv2_2277_3_219 262125 263231 + GT4
Gene ID: HRGMv2_2277_3_212
Type: TC
Location: 254278 - 255015 (+)
Gene ID: HRGMv2_2277_3_213
Type: CAZyme
Location: 255093 - 255863 (+)
Gene ID: HRGMv2_2277_3_214
Type: CAZyme
Location: 255901 - 256800 (+)
Gene ID: HRGMv2_2277_3_215
Type: pfam
Location: 256814 - 257878 (+)
Gene ID: HRGMv2_2277_3_216
Type: CAZyme
Location: 257891 - 258994 (+)
Gene ID: HRGMv2_2277_3_217
Type: pfam
Location: 259081 - 260208 (+)
Gene ID: HRGMv2_2277_3_218
Type: peptidase
Location: 260228 - 262087 (+)
Gene ID: HRGMv2_2277_3_219
Type: CAZyme
Location: 262125 - 263231 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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