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Cluster: HRGMv2_2277_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2277_3 HRGMv2_2277_3_175 205771 206895 + CE8
TF HRGMv2_2277_3 HRGMv2_2277_3_176 206914 208551 + HTH_AraC | HTH_AraC
TC HRGMv2_2277_3 HRGMv2_2277_3_177 208617 210407 + 8.A.59.2.1
pfam HRGMv2_2277_3 HRGMv2_2277_3_178 210439 211410 + Peripla_BP_4
TC HRGMv2_2277_3 HRGMv2_2277_3_179 211500 212516 + 3.A.1.2.3
pfam HRGMv2_2277_3 HRGMv2_2277_3_180 212675 214015 + Peripla_BP_4 | Peripla_BP_7
TC HRGMv2_2277_3 HRGMv2_2277_3_181 214150 215658 + 3.A.1.2.3
TC HRGMv2_2277_3 HRGMv2_2277_3_182 215674 217329 + 3.A.1.2.3
Gene ID: HRGMv2_2277_3_175
Type: CAZyme
Location: 205771 - 206895 (+)
Gene ID: HRGMv2_2277_3_176
Type: TF
Location: 206914 - 208551 (+)
Gene ID: HRGMv2_2277_3_177
Type: TC
Location: 208617 - 210407 (+)
Gene ID: HRGMv2_2277_3_178
Type: pfam
Location: 210439 - 211410 (+)
Gene ID: HRGMv2_2277_3_179
Type: TC
Location: 211500 - 212516 (+)
Gene ID: HRGMv2_2277_3_180
Type: pfam
Location: 212675 - 214015 (+)
Gene ID: HRGMv2_2277_3_181
Type: TC
Location: 214150 - 215658 (+)
Gene ID: HRGMv2_2277_3_182
Type: TC
Location: 215674 - 217329 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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