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Cluster: HRGMv2_2277_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2277_1 HRGMv2_2277_1_6 5738 7237 - GH77
TF HRGMv2_2277_1 HRGMv2_2277_1_7 7316 8287 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2277_1 HRGMv2_2277_1_8 8435 10723 + GT35
peptidase HRGMv2_2277_1 HRGMv2_2277_1_9 10831 12084 + S08.UPA
TC HRGMv2_2277_1 HRGMv2_2277_1_10 12225 13637 - 3.B.1.1.6
TC HRGMv2_2277_1 HRGMv2_2277_1_11 13672 14817 - 3.B.1.1.2
TC HRGMv2_2277_1 HRGMv2_2277_1_12 14868 15257 - 3.B.1.1.2
pfam HRGMv2_2277_1 HRGMv2_2277_1_13 15308 16123 - OAD_gamma
TC HRGMv2_2277_1 HRGMv2_2277_1_14 16141 17592 - 3.B.1.1.5
STP HRGMv2_2277_1 HRGMv2_2277_1_15 17848 19062 - ACT | ACT
pfam HRGMv2_2277_1 HRGMv2_2277_1_16 19195 20913 - DUF5722
TC HRGMv2_2277_1 HRGMv2_2277_1_17 21058 22491 - 3.A.1.2.20
TC HRGMv2_2277_1 HRGMv2_2277_1_18 22488 23501 - 8.A.59.2.1
TF HRGMv2_2277_1 HRGMv2_2277_1_19 23514 25139 - HTH_AraC | HTH_AraC
TC HRGMv2_2277_1 HRGMv2_2277_1_20 25136 26098 - 3.A.1.2.13
TC HRGMv2_2277_1 HRGMv2_2277_1_21 26143 27645 - 3.A.1.2.19
pfam HRGMv2_2277_1 HRGMv2_2277_1_22 27664 28485 - Lactamase_B
TC HRGMv2_2277_1 HRGMv2_2277_1_23 28549 29667 - 3.A.1.2.9
NULL(UNKNOWN) HRGMv2_2277_1 HRGMv2_2277_1_24 29821 30876 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2277_1 HRGMv2_2277_1_25 31095 31793 - Lactamase_B | Lactamase_B_2
TC HRGMv2_2277_1 HRGMv2_2277_1_26 31840 32655 - 3.A.1.1.7
TC HRGMv2_2277_1 HRGMv2_2277_1_27 32670 33566 - 3.A.1.1.3
TC HRGMv2_2277_1 HRGMv2_2277_1_28 33746 35146 - 3.A.1.1.3
TF HRGMv2_2277_1 HRGMv2_2277_1_29 35450 37711 + LacI
TF HRGMv2_2277_1 HRGMv2_2277_1_30 37881 38735 - HTH_6
TC HRGMv2_2277_1 HRGMv2_2277_1_31 38870 39418 + 4.F.1.1.7
TC HRGMv2_2277_1 HRGMv2_2277_1_32 39436 40317 - 2.A.115.1.2
Gene ID: HRGMv2_2277_1_6
Type: CAZyme
Location: 5738 - 7237 (-)
Gene ID: HRGMv2_2277_1_7
Type: TF
Location: 7316 - 8287 (-)
Gene ID: HRGMv2_2277_1_8
Type: CAZyme
Location: 8435 - 10723 (+)
Gene ID: HRGMv2_2277_1_9
Type: peptidase
Location: 10831 - 12084 (+)
Gene ID: HRGMv2_2277_1_10
Type: TC
Location: 12225 - 13637 (-)
Gene ID: HRGMv2_2277_1_11
Type: TC
Location: 13672 - 14817 (-)
Gene ID: HRGMv2_2277_1_12
Type: TC
Location: 14868 - 15257 (-)
Gene ID: HRGMv2_2277_1_13
Type: pfam
Location: 15308 - 16123 (-)
Gene ID: HRGMv2_2277_1_14
Type: TC
Location: 16141 - 17592 (-)
Gene ID: HRGMv2_2277_1_15
Type: STP
Location: 17848 - 19062 (-)
Gene ID: HRGMv2_2277_1_16
Type: pfam
Location: 19195 - 20913 (-)
Gene ID: HRGMv2_2277_1_17
Type: TC
Location: 21058 - 22491 (-)
Gene ID: HRGMv2_2277_1_18
Type: TC
Location: 22488 - 23501 (-)
Gene ID: HRGMv2_2277_1_19
Type: TF
Location: 23514 - 25139 (-)
Gene ID: HRGMv2_2277_1_20
Type: TC
Location: 25136 - 26098 (-)
Gene ID: HRGMv2_2277_1_21
Type: TC
Location: 26143 - 27645 (-)
Gene ID: HRGMv2_2277_1_22
Type: pfam
Location: 27664 - 28485 (-)
Gene ID: HRGMv2_2277_1_23
Type: TC
Location: 28549 - 29667 (-)
Gene ID: HRGMv2_2277_1_24
Type:
Location: 29821 - 30876 (-)
Gene ID: HRGMv2_2277_1_25
Type: pfam
Location: 31095 - 31793 (-)
Gene ID: HRGMv2_2277_1_26
Type: TC
Location: 31840 - 32655 (-)
Gene ID: HRGMv2_2277_1_27
Type: TC
Location: 32670 - 33566 (-)
Gene ID: HRGMv2_2277_1_28
Type: TC
Location: 33746 - 35146 (-)
Gene ID: HRGMv2_2277_1_29
Type: TF
Location: 35450 - 37711 (+)
Gene ID: HRGMv2_2277_1_30
Type: TF
Location: 37881 - 38735 (-)
Gene ID: HRGMv2_2277_1_31
Type: TC
Location: 38870 - 39418 (+)
Gene ID: HRGMv2_2277_1_32
Type: TC
Location: 39436 - 40317 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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