dbCAN Logo

Cluster: HRGMv2_2276_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2276_22 HRGMv2_2276_22_11 14274 15518 + 3.A.1.1.41
TC HRGMv2_2276_22 HRGMv2_2276_22_12 15589 16473 + 3.A.1.1.23
TC HRGMv2_2276_22 HRGMv2_2276_22_13 16486 17316 + 3.A.1.1.34
CAZyme HRGMv2_2276_22 HRGMv2_2276_22_14 17335 19485 + GH3
CAZyme HRGMv2_2276_22 HRGMv2_2276_22_15 19501 22803 + GH94
TF HRGMv2_2276_22 HRGMv2_2276_22_16 22816 23775 + LacI
TC HRGMv2_2276_22 HRGMv2_2276_22_17 24002 24628 + 9.B.156.3.1
TC HRGMv2_2276_22 HRGMv2_2276_22_18 24636 26027 + 2.A.25.1.9
TC HRGMv2_2276_22 HRGMv2_2276_22_19 26024 27340 - 2.A.26.1.5
TF HRGMv2_2276_22 HRGMv2_2276_22_20 27554 28255 + HTH_3
TC HRGMv2_2276_22 HRGMv2_2276_22_21 28271 29530 + 2.A.23.1.2
pfam HRGMv2_2276_22 HRGMv2_2276_22_22 29657 30901 + Halogen_Hydrol
pfam HRGMv2_2276_22 HRGMv2_2276_22_23 30951 32087 + TelA
TC HRGMv2_2276_22 HRGMv2_2276_22_24 32894 34252 - 2.A.66.1.32
Gene ID: HRGMv2_2276_22_11
Type: TC
Location: 14274 - 15518 (+)
Gene ID: HRGMv2_2276_22_12
Type: TC
Location: 15589 - 16473 (+)
Gene ID: HRGMv2_2276_22_13
Type: TC
Location: 16486 - 17316 (+)
Gene ID: HRGMv2_2276_22_14
Type: CAZyme
Location: 17335 - 19485 (+)
Gene ID: HRGMv2_2276_22_15
Type: CAZyme
Location: 19501 - 22803 (+)
Gene ID: HRGMv2_2276_22_16
Type: TF
Location: 22816 - 23775 (+)
Gene ID: HRGMv2_2276_22_17
Type: TC
Location: 24002 - 24628 (+)
Gene ID: HRGMv2_2276_22_18
Type: TC
Location: 24636 - 26027 (+)
Gene ID: HRGMv2_2276_22_19
Type: TC
Location: 26024 - 27340 (-)
Gene ID: HRGMv2_2276_22_20
Type: TF
Location: 27554 - 28255 (+)
Gene ID: HRGMv2_2276_22_21
Type: TC
Location: 28271 - 29530 (+)
Gene ID: HRGMv2_2276_22_22
Type: pfam
Location: 29657 - 30901 (+)
Gene ID: HRGMv2_2276_22_23
Type: pfam
Location: 30951 - 32087 (+)
Gene ID: HRGMv2_2276_22_24
Type: TC
Location: 32894 - 34252 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List