Cluster: HRGMv2_2276_CGC22
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2276
- CGC Family ID: CGCFAM_01110
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2276_19 | HRGMv2_2276_19_12 | 14400 | 15947 | + | 1.C.105.2.8 |
| TF | HRGMv2_2276_19 | HRGMv2_2276_19_13 | 16033 | 17043 | - | LacI |
| pfam | HRGMv2_2276_19 | HRGMv2_2276_19_14 | 17232 | 18158 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_2276_19 | HRGMv2_2276_19_15 | 18155 | 19291 | + | GH179 |
| STP | HRGMv2_2276_19 | HRGMv2_2276_19_16 | 19319 | 20602 | + | SBP_bac_1 |
| TC | HRGMv2_2276_19 | HRGMv2_2276_19_17 | 20650 | 21546 | + | 3.A.1.1.7 |
| TC | HRGMv2_2276_19 | HRGMv2_2276_19_18 | 21543 | 22376 | + | 3.A.1.1.41 |
Gene ID: HRGMv2_2276_19_12
Type: TC
Location: 14400 - 15947 (+)
Type: TC
Location: 14400 - 15947 (+)
Gene ID: HRGMv2_2276_19_13
Type: TF
Location: 16033 - 17043 (-)
Type: TF
Location: 16033 - 17043 (-)
Gene ID: HRGMv2_2276_19_14
Type: pfam
Location: 17232 - 18158 (+)
Type: pfam
Location: 17232 - 18158 (+)
Gene ID: HRGMv2_2276_19_15
Type: CAZyme
Location: 18155 - 19291 (+)
Type: CAZyme
Location: 18155 - 19291 (+)
Gene ID: HRGMv2_2276_19_16
Type: STP
Location: 19319 - 20602 (+)
Type: STP
Location: 19319 - 20602 (+)
Gene ID: HRGMv2_2276_19_17
Type: TC
Location: 20650 - 21546 (+)
Type: TC
Location: 20650 - 21546 (+)
Gene ID: HRGMv2_2276_19_18
Type: TC
Location: 21543 - 22376 (+)
Type: TC
Location: 21543 - 22376 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Extibacter
Species
Extibacter hylemonae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.