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Cluster: HRGMv2_2270_CGC95

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2270_35 HRGMv2_2270_35_35 43980 45512 + 3.A.1.121.4
CAZyme HRGMv2_2270_35 HRGMv2_2270_35_36 45648 47876 + GH3
TF HRGMv2_2270_35 HRGMv2_2270_35_37 48142 50409 + HTH_AraC
STP HRGMv2_2270_35 HRGMv2_2270_35_38 50585 52213 + SBP_bac_1
TC HRGMv2_2270_35 HRGMv2_2270_35_39 52309 53229 + 3.A.1.1.10
TC HRGMv2_2270_35 HRGMv2_2270_35_40 53242 54123 + 3.A.1.1.10
CAZyme HRGMv2_2270_35 HRGMv2_2270_35_41 54177 55274 + GH88
CAZyme HRGMv2_2270_35 HRGMv2_2270_35_42 55310 57088 + PL37
CAZyme HRGMv2_2270_35 HRGMv2_2270_35_43 57085 58416 + GH30_1
Gene ID: HRGMv2_2270_35_35
Type: TC
Location: 43980 - 45512 (+)
Gene ID: HRGMv2_2270_35_36
Type: CAZyme
Location: 45648 - 47876 (+)
Gene ID: HRGMv2_2270_35_37
Type: TF
Location: 48142 - 50409 (+)
Gene ID: HRGMv2_2270_35_38
Type: STP
Location: 50585 - 52213 (+)
Gene ID: HRGMv2_2270_35_39
Type: TC
Location: 52309 - 53229 (+)
Gene ID: HRGMv2_2270_35_40
Type: TC
Location: 53242 - 54123 (+)
Gene ID: HRGMv2_2270_35_41
Type: CAZyme
Location: 54177 - 55274 (+)
Gene ID: HRGMv2_2270_35_42
Type: CAZyme
Location: 55310 - 57088 (+)
Gene ID: HRGMv2_2270_35_43
Type: CAZyme
Location: 57085 - 58416 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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