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Cluster: HRGMv2_2270_CGC88

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2270_32 HRGMv2_2270_32_1 233 1642 + 4.A.1.2.13
CAZyme HRGMv2_2270_32 HRGMv2_2270_32_2 1659 3323 + GH13_29
TC HRGMv2_2270_32 HRGMv2_2270_32_3 3457 4017 - 2.A.107.1.2
CAZyme HRGMv2_2270_32 HRGMv2_2270_32_4 4286 5635 - GH4
TC HRGMv2_2270_32 HRGMv2_2270_32_5 5686 7278 - 4.A.1.1.13
pfam HRGMv2_2270_32 HRGMv2_2270_32_6 7308 8144 - PRD | PRD | CAT_RBD
TC HRGMv2_2270_32 HRGMv2_2270_32_7 8181 8666 - 4.A.1.2.2
pfam HRGMv2_2270_32 HRGMv2_2270_32_8 8832 9746 - YitT_membrane | DUF2179
TC HRGMv2_2270_32 HRGMv2_2270_32_9 9904 11700 + 9.B.33.1.2
TF HRGMv2_2270_32 HRGMv2_2270_32_10 11697 13223 + HTH_AraC | HTH_AraC
STP HRGMv2_2270_32 HRGMv2_2270_32_11 13482 14786 + SBP_bac_1
TC HRGMv2_2270_32 HRGMv2_2270_32_12 14904 15800 + 3.A.1.1.20
TC HRGMv2_2270_32 HRGMv2_2270_32_13 15812 16675 + 3.A.1.1.34
Gene ID: HRGMv2_2270_32_1
Type: TC
Location: 233 - 1642 (+)
Gene ID: HRGMv2_2270_32_2
Type: CAZyme
Location: 1659 - 3323 (+)
Gene ID: HRGMv2_2270_32_3
Type: TC
Location: 3457 - 4017 (-)
Gene ID: HRGMv2_2270_32_4
Type: CAZyme
Location: 4286 - 5635 (-)
Gene ID: HRGMv2_2270_32_5
Type: TC
Location: 5686 - 7278 (-)
Gene ID: HRGMv2_2270_32_6
Type: pfam
Location: 7308 - 8144 (-)
Gene ID: HRGMv2_2270_32_7
Type: TC
Location: 8181 - 8666 (-)
Gene ID: HRGMv2_2270_32_8
Type: pfam
Location: 8832 - 9746 (-)
Gene ID: HRGMv2_2270_32_9
Type: TC
Location: 9904 - 11700 (+)
Gene ID: HRGMv2_2270_32_10
Type: TF
Location: 11697 - 13223 (+)
Gene ID: HRGMv2_2270_32_11
Type: STP
Location: 13482 - 14786 (+)
Gene ID: HRGMv2_2270_32_12
Type: TC
Location: 14904 - 15800 (+)
Gene ID: HRGMv2_2270_32_13
Type: TC
Location: 15812 - 16675 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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