Cluster: HRGMv2_2270_CGC84
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2270
- CGC Family ID: CGCFAM_08555
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2270_29 | HRGMv2_2270_29_1 | 533 | 1924 | + | GH177 |
| TC | HRGMv2_2270_29 | HRGMv2_2270_29_2 | 1999 | 3720 | + | 3.A.1.5.1 |
| TC | HRGMv2_2270_29 | HRGMv2_2270_29_3 | 3751 | 4830 | + | 3.A.1.5.25 |
| TC | HRGMv2_2270_29 | HRGMv2_2270_29_4 | 4842 | 5774 | + | 3.A.1.5.2 |
| TC | HRGMv2_2270_29 | HRGMv2_2270_29_5 | 5814 | 6842 | + | 3.A.1.5.25 |
| TC | HRGMv2_2270_29 | HRGMv2_2270_29_6 | 6839 | 7837 | + | 3.A.1.5.20 |
| TF | HRGMv2_2270_29 | HRGMv2_2270_29_7 | 7895 | 8578 | + | GntR |
| pfam | HRGMv2_2270_29 | HRGMv2_2270_29_8 | 8680 | 9864 | + | Cys_Met_Meta_PP | Beta_elim_lyase |
| CAZyme | HRGMv2_2270_29 | HRGMv2_2270_29_9 | 9895 | 12153 | + | GH36 |
| pfam | HRGMv2_2270_29 | HRGMv2_2270_29_10 | 12267 | 13781 | + | SLFN_AlbA_2 | HATPase_c_4 |
| pfam | HRGMv2_2270_29 | HRGMv2_2270_29_11 | 13853 | 14602 | - | APH | EcKL |
| CAZyme | HRGMv2_2270_29 | HRGMv2_2270_29_12 | 14749 | 16659 | - | CBM48 | GH13_9 |
| CAZyme | HRGMv2_2270_29 | HRGMv2_2270_29_13 | 16664 | 17998 | - | GH13_20 |
Gene ID: HRGMv2_2270_29_1
Type: CAZyme
Location: 533 - 1924 (+)
Type: CAZyme
Location: 533 - 1924 (+)
Gene ID: HRGMv2_2270_29_2
Type: TC
Location: 1999 - 3720 (+)
Type: TC
Location: 1999 - 3720 (+)
Gene ID: HRGMv2_2270_29_3
Type: TC
Location: 3751 - 4830 (+)
Type: TC
Location: 3751 - 4830 (+)
Gene ID: HRGMv2_2270_29_4
Type: TC
Location: 4842 - 5774 (+)
Type: TC
Location: 4842 - 5774 (+)
Gene ID: HRGMv2_2270_29_5
Type: TC
Location: 5814 - 6842 (+)
Type: TC
Location: 5814 - 6842 (+)
Gene ID: HRGMv2_2270_29_6
Type: TC
Location: 6839 - 7837 (+)
Type: TC
Location: 6839 - 7837 (+)
Gene ID: HRGMv2_2270_29_7
Type: TF
Location: 7895 - 8578 (+)
Type: TF
Location: 7895 - 8578 (+)
Gene ID: HRGMv2_2270_29_8
Type: pfam
Location: 8680 - 9864 (+)
Type: pfam
Location: 8680 - 9864 (+)
Gene ID: HRGMv2_2270_29_9
Type: CAZyme
Location: 9895 - 12153 (+)
Type: CAZyme
Location: 9895 - 12153 (+)
Gene ID: HRGMv2_2270_29_10
Type: pfam
Location: 12267 - 13781 (+)
Type: pfam
Location: 12267 - 13781 (+)
Gene ID: HRGMv2_2270_29_11
Type: pfam
Location: 13853 - 14602 (-)
Type: pfam
Location: 13853 - 14602 (-)
Gene ID: HRGMv2_2270_29_12
Type: CAZyme
Location: 14749 - 16659 (-)
Type: CAZyme
Location: 14749 - 16659 (-)
Gene ID: HRGMv2_2270_29_13
Type: CAZyme
Location: 16664 - 17998 (-)
Type: CAZyme
Location: 16664 - 17998 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Hungatella
Species
Hungatella effluvii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.