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Cluster: HRGMv2_2270_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2270_1 HRGMv2_2270_1_266 288405 291338 - GH65
pfam HRGMv2_2270_1 HRGMv2_2270_1_267 291295 292641 - MFS_1
pfam HRGMv2_2270_1 HRGMv2_2270_1_268 292664 293503 - Lactamase_B | Lactamase_B_2
TC HRGMv2_2270_1 HRGMv2_2270_1_269 293544 294377 - 3.A.1.1.28
TC HRGMv2_2270_1 HRGMv2_2270_1_270 294390 295271 - 3.A.1.1.28
TC HRGMv2_2270_1 HRGMv2_2270_1_271 295403 296659 - 3.A.1.1.28
TC HRGMv2_2270_1 HRGMv2_2270_1_272 296878 298719 + 9.B.33.1.1
TF HRGMv2_2270_1 HRGMv2_2270_1_273 298778 300334 + HTH_AraC | HTH_AraC
pfam HRGMv2_2270_1 HRGMv2_2270_1_274 300472 301806 - ELFV_dehydrog | ELFV_dehydrog_N
TC HRGMv2_2270_1 HRGMv2_2270_1_275 302084 302683 + 3.A.1.25.5
Gene ID: HRGMv2_2270_1_266
Type: CAZyme
Location: 288405 - 291338 (-)
Gene ID: HRGMv2_2270_1_267
Type: pfam
Location: 291295 - 292641 (-)
Gene ID: HRGMv2_2270_1_268
Type: pfam
Location: 292664 - 293503 (-)
Gene ID: HRGMv2_2270_1_269
Type: TC
Location: 293544 - 294377 (-)
Gene ID: HRGMv2_2270_1_270
Type: TC
Location: 294390 - 295271 (-)
Gene ID: HRGMv2_2270_1_271
Type: TC
Location: 295403 - 296659 (-)
Gene ID: HRGMv2_2270_1_272
Type: TC
Location: 296878 - 298719 (+)
Gene ID: HRGMv2_2270_1_273
Type: TF
Location: 298778 - 300334 (+)
Gene ID: HRGMv2_2270_1_274
Type: pfam
Location: 300472 - 301806 (-)
Gene ID: HRGMv2_2270_1_275
Type: TC
Location: 302084 - 302683 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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