dbCAN Logo

Cluster: HRGMv2_2270_CGC79

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2270_24 HRGMv2_2270_24_42 49675 51939 + 3.A.9.1.2
pfam HRGMv2_2270_24 HRGMv2_2270_24_43 52111 52761 - Ubie_methyltran | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TF HRGMv2_2270_24 HRGMv2_2270_24_44 52742 53299 - PadR
CAZyme HRGMv2_2270_24 HRGMv2_2270_24_45 53387 55042 - CBM91 | GH43_11
peptidase HRGMv2_2270_24 HRGMv2_2270_24_46 55168 56157 - S12.UPW
STP HRGMv2_2270_24 HRGMv2_2270_24_47 56449 57855 + SBP_bac_1
TC HRGMv2_2270_24 HRGMv2_2270_24_48 57984 58871 + 3.A.1.1.28
TC HRGMv2_2270_24 HRGMv2_2270_24_49 58871 59725 + 3.A.1.1.45
TC HRGMv2_2270_24 HRGMv2_2270_24_50 60209 62044 + 8.A.59.2.1
TF HRGMv2_2270_24 HRGMv2_2270_24_51 62041 63576 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2270_24 HRGMv2_2270_24_52 63854 65281 + GH43_35
TC HRGMv2_2270_24 HRGMv2_2270_24_53 65394 66338 + 3.A.1.1.10
TC HRGMv2_2270_24 HRGMv2_2270_24_54 66340 67212 + 3.A.1.1.10
TC HRGMv2_2270_24 HRGMv2_2270_24_55 67247 68815 + 3.A.1.1.10
CAZyme HRGMv2_2270_24 HRGMv2_2270_24_56 69058 71700 + GH106
TC HRGMv2_2270_24 HRGMv2_2270_24_57 71774 73582 + 8.A.59.2.1
Gene ID: HRGMv2_2270_24_42
Type: TC
Location: 49675 - 51939 (+)
Gene ID: HRGMv2_2270_24_43
Type: pfam
Location: 52111 - 52761 (-)
Gene ID: HRGMv2_2270_24_44
Type: TF
Location: 52742 - 53299 (-)
Gene ID: HRGMv2_2270_24_45
Type: CAZyme
Location: 53387 - 55042 (-)
Gene ID: HRGMv2_2270_24_46
Type: peptidase
Location: 55168 - 56157 (-)
Gene ID: HRGMv2_2270_24_47
Type: STP
Location: 56449 - 57855 (+)
Gene ID: HRGMv2_2270_24_48
Type: TC
Location: 57984 - 58871 (+)
Gene ID: HRGMv2_2270_24_49
Type: TC
Location: 58871 - 59725 (+)
Gene ID: HRGMv2_2270_24_50
Type: TC
Location: 60209 - 62044 (+)
Gene ID: HRGMv2_2270_24_51
Type: TF
Location: 62041 - 63576 (+)
Gene ID: HRGMv2_2270_24_52
Type: CAZyme
Location: 63854 - 65281 (+)
Gene ID: HRGMv2_2270_24_53
Type: TC
Location: 65394 - 66338 (+)
Gene ID: HRGMv2_2270_24_54
Type: TC
Location: 66340 - 67212 (+)
Gene ID: HRGMv2_2270_24_55
Type: TC
Location: 67247 - 68815 (+)
Gene ID: HRGMv2_2270_24_56
Type: CAZyme
Location: 69058 - 71700 (+)
Gene ID: HRGMv2_2270_24_57
Type: TC
Location: 71774 - 73582 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List