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Cluster: HRGMv2_2270_CGC68

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2270_20 HRGMv2_2270_20_87 100429 101547 - GH105
TF HRGMv2_2270_20 HRGMv2_2270_20_88 101572 103080 - HTH_AraC
TC HRGMv2_2270_20 HRGMv2_2270_20_89 103073 104842 - 8.A.59.2.1
STP HRGMv2_2270_20 HRGMv2_2270_20_90 105031 106386 + SBP_bac_1
TC HRGMv2_2270_20 HRGMv2_2270_20_91 106414 107343 + 3.A.1.1.11
TC HRGMv2_2270_20 HRGMv2_2270_20_92 107350 108204 + 3.A.1.1.11
CAZyme HRGMv2_2270_20 HRGMv2_2270_20_93 108350 111697 + GH38
CAZyme HRGMv2_2270_20 HRGMv2_2270_20_94 111717 113045 + GH28
Gene ID: HRGMv2_2270_20_87
Type: CAZyme
Location: 100429 - 101547 (-)
Gene ID: HRGMv2_2270_20_88
Type: TF
Location: 101572 - 103080 (-)
Gene ID: HRGMv2_2270_20_89
Type: TC
Location: 103073 - 104842 (-)
Gene ID: HRGMv2_2270_20_90
Type: STP
Location: 105031 - 106386 (+)
Gene ID: HRGMv2_2270_20_91
Type: TC
Location: 106414 - 107343 (+)
Gene ID: HRGMv2_2270_20_92
Type: TC
Location: 107350 - 108204 (+)
Gene ID: HRGMv2_2270_20_93
Type: CAZyme
Location: 108350 - 111697 (+)
Gene ID: HRGMv2_2270_20_94
Type: CAZyme
Location: 111717 - 113045 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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