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Cluster: HRGMv2_2270_CGC64

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2270_18 HRGMv2_2270_18_77 86247 87938 - GH43_28
pfam HRGMv2_2270_18 HRGMv2_2270_18_78 87939 88589 - ThuA
TC HRGMv2_2270_18 HRGMv2_2270_18_79 88617 89534 - 8.A.5.1.7
pfam HRGMv2_2270_18 HRGMv2_2270_18_80 89555 90376 - AP_endonuc_2
TC HRGMv2_2270_18 HRGMv2_2270_18_81 90514 92103 - 3.A.1.1.9
TC HRGMv2_2270_18 HRGMv2_2270_18_82 92161 93033 - 3.A.1.1.10
TC HRGMv2_2270_18 HRGMv2_2270_18_83 93052 93948 - 3.A.1.1.10
TC HRGMv2_2270_18 HRGMv2_2270_18_84 94216 95892 - 8.A.59.2.1
TF HRGMv2_2270_18 HRGMv2_2270_18_85 95901 97130 - HTH_AraC
TC HRGMv2_2270_18 HRGMv2_2270_18_86 97267 98316 - 3.A.1.2.14
TC HRGMv2_2270_18 HRGMv2_2270_18_87 98318 99400 - 3.A.1.2.14
TC HRGMv2_2270_18 HRGMv2_2270_18_88 99397 100917 - 3.A.1.2.23
TC HRGMv2_2270_18 HRGMv2_2270_18_89 101026 102108 - 3.A.1.2.23
TF HRGMv2_2270_18 HRGMv2_2270_18_90 102490 103572 + GntR
TF HRGMv2_2270_18 HRGMv2_2270_18_91 103581 105197 - HTH_AraC
TC HRGMv2_2270_18 HRGMv2_2270_18_92 105234 106250 - 3.A.1.2.14
TC HRGMv2_2270_18 HRGMv2_2270_18_93 106326 107840 - 8.A.59.2.1
Gene ID: HRGMv2_2270_18_77
Type: CAZyme
Location: 86247 - 87938 (-)
Gene ID: HRGMv2_2270_18_78
Type: pfam
Location: 87939 - 88589 (-)
Gene ID: HRGMv2_2270_18_79
Type: TC
Location: 88617 - 89534 (-)
Gene ID: HRGMv2_2270_18_80
Type: pfam
Location: 89555 - 90376 (-)
Gene ID: HRGMv2_2270_18_81
Type: TC
Location: 90514 - 92103 (-)
Gene ID: HRGMv2_2270_18_82
Type: TC
Location: 92161 - 93033 (-)
Gene ID: HRGMv2_2270_18_83
Type: TC
Location: 93052 - 93948 (-)
Gene ID: HRGMv2_2270_18_84
Type: TC
Location: 94216 - 95892 (-)
Gene ID: HRGMv2_2270_18_85
Type: TF
Location: 95901 - 97130 (-)
Gene ID: HRGMv2_2270_18_86
Type: TC
Location: 97267 - 98316 (-)
Gene ID: HRGMv2_2270_18_87
Type: TC
Location: 98318 - 99400 (-)
Gene ID: HRGMv2_2270_18_88
Type: TC
Location: 99397 - 100917 (-)
Gene ID: HRGMv2_2270_18_89
Type: TC
Location: 101026 - 102108 (-)
Gene ID: HRGMv2_2270_18_90
Type: TF
Location: 102490 - 103572 (+)
Gene ID: HRGMv2_2270_18_91
Type: TF
Location: 103581 - 105197 (-)
Gene ID: HRGMv2_2270_18_92
Type: TC
Location: 105234 - 106250 (-)
Gene ID: HRGMv2_2270_18_93
Type: TC
Location: 106326 - 107840 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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