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Cluster: HRGMv2_2270_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2270_13 HRGMv2_2270_13_25 33876 34793 + 3.A.1.131.1
pfam HRGMv2_2270_13 HRGMv2_2270_13_26 34790 35551 + ABC2_membrane_2
CAZyme HRGMv2_2270_13 HRGMv2_2270_13_27 35641 38118 - CBM67 | GH78
STP HRGMv2_2270_13 HRGMv2_2270_13_28 38488 39882 + SBP_bac_1
TC HRGMv2_2270_13 HRGMv2_2270_13_29 39977 40834 + 3.A.1.1.7
TC HRGMv2_2270_13 HRGMv2_2270_13_30 40836 41666 + 3.A.1.1.42
TC HRGMv2_2270_13 HRGMv2_2270_13_31 41774 43564 + 9.B.33.1.1
TF HRGMv2_2270_13 HRGMv2_2270_13_32 43566 45095 + HTH_AraC | HTH_AraC
peptidase HRGMv2_2270_13 HRGMv2_2270_13_33 45085 46275 + S12.UPW
CAZyme HRGMv2_2270_13 HRGMv2_2270_13_34 46312 49440 + GH38
Gene ID: HRGMv2_2270_13_25
Type: TC
Location: 33876 - 34793 (+)
Gene ID: HRGMv2_2270_13_26
Type: pfam
Location: 34790 - 35551 (+)
Gene ID: HRGMv2_2270_13_27
Type: CAZyme
Location: 35641 - 38118 (-)
Gene ID: HRGMv2_2270_13_28
Type: STP
Location: 38488 - 39882 (+)
Gene ID: HRGMv2_2270_13_29
Type: TC
Location: 39977 - 40834 (+)
Gene ID: HRGMv2_2270_13_30
Type: TC
Location: 40836 - 41666 (+)
Gene ID: HRGMv2_2270_13_31
Type: TC
Location: 41774 - 43564 (+)
Gene ID: HRGMv2_2270_13_32
Type: TF
Location: 43566 - 45095 (+)
Gene ID: HRGMv2_2270_13_33
Type: peptidase
Location: 45085 - 46275 (+)
Gene ID: HRGMv2_2270_13_34
Type: CAZyme
Location: 46312 - 49440 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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