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Cluster: HRGMv2_2270_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2270_1 HRGMv2_2270_1_78 105434 106426 - 3.A.1.5.20
TC HRGMv2_2270_1 HRGMv2_2270_1_79 106416 107393 - 3.A.1.5.20
TC HRGMv2_2270_1 HRGMv2_2270_1_80 107428 109098 - 3.A.1.5.22
TC HRGMv2_2270_1 HRGMv2_2270_1_81 109136 109999 - 3.A.1.5.20
TC HRGMv2_2270_1 HRGMv2_2270_1_82 110012 110968 - 3.A.1.5.20
TC HRGMv2_2270_1 HRGMv2_2270_1_83 111318 113924 - 3.A.3.2.21
pfam HRGMv2_2270_1 HRGMv2_2270_1_84 114085 114567 + LuxS
CAZyme HRGMv2_2270_1 HRGMv2_2270_1_85 114659 116527 - GH13_11
TC HRGMv2_2270_1 HRGMv2_2270_1_86 116593 118413 - 3.A.1.120.6
Gene ID: HRGMv2_2270_1_78
Type: TC
Location: 105434 - 106426 (-)
Gene ID: HRGMv2_2270_1_79
Type: TC
Location: 106416 - 107393 (-)
Gene ID: HRGMv2_2270_1_80
Type: TC
Location: 107428 - 109098 (-)
Gene ID: HRGMv2_2270_1_81
Type: TC
Location: 109136 - 109999 (-)
Gene ID: HRGMv2_2270_1_82
Type: TC
Location: 110012 - 110968 (-)
Gene ID: HRGMv2_2270_1_83
Type: TC
Location: 111318 - 113924 (-)
Gene ID: HRGMv2_2270_1_84
Type: pfam
Location: 114085 - 114567 (+)
Gene ID: HRGMv2_2270_1_85
Type: CAZyme
Location: 114659 - 116527 (-)
Gene ID: HRGMv2_2270_1_86
Type: TC
Location: 116593 - 118413 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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