Cluster: HRGMv2_2270_CGC28
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2270
- CGC Family ID: CGCFAM_08548
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2270_6 | HRGMv2_2270_6_12 | 9459 | 11522 | + | GH115 |
| TC | HRGMv2_2270_6 | HRGMv2_2270_6_13 | 11485 | 13239 | + | 9.B.33.1.1 |
| TF | HRGMv2_2270_6 | HRGMv2_2270_6_14 | 13242 | 14750 | + | HTH_AraC |
| STP | HRGMv2_2270_6 | HRGMv2_2270_6_15 | 14916 | 16301 | + | SBP_bac_1 |
| TC | HRGMv2_2270_6 | HRGMv2_2270_6_16 | 16404 | 17297 | + | 3.A.1.1.11 |
| TC | HRGMv2_2270_6 | HRGMv2_2270_6_17 | 17301 | 18152 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_2270_6 | HRGMv2_2270_6_18 | 18177 | 23996 | + | GH136 |
| pfam | HRGMv2_2270_6 | HRGMv2_2270_6_19 | 24210 | 24566 | + | Hpt |
| TC | HRGMv2_2270_6 | HRGMv2_2270_6_20 | 24597 | 26645 | + | 8.A.59.4.1 |
| STP | HRGMv2_2270_6 | HRGMv2_2270_6_21 | 26871 | 28340 | + | SBP_bac_1 |
| TC | HRGMv2_2270_6 | HRGMv2_2270_6_22 | 28362 | 29297 | + | 3.A.1.1.25 |
| TC | HRGMv2_2270_6 | HRGMv2_2270_6_23 | 29297 | 30136 | + | 3.A.1.1.41 |
| CAZyme | HRGMv2_2270_6 | HRGMv2_2270_6_24 | 30205 | 31305 | + | GH109 |
| pfam | HRGMv2_2270_6 | HRGMv2_2270_6_25 | 31307 | 32203 | + | GFO_IDH_MocA |
| CAZyme | HRGMv2_2270_6 | HRGMv2_2270_6_26 | 32224 | 33294 | + | GH177 |
| TC | HRGMv2_2270_6 | HRGMv2_2270_6_27 | 33324 | 35009 | + | 8.A.59.2.1 |
| TF | HRGMv2_2270_6 | HRGMv2_2270_6_28 | 35006 | 36535 | + | HTH_AraC |
| pfam | HRGMv2_2270_6 | HRGMv2_2270_6_29 | 36558 | 37166 | - | PBECR4 |
| CAZyme | HRGMv2_2270_6 | HRGMv2_2270_6_30 | 37504 | 38628 | - | GH105 |
Gene ID: HRGMv2_2270_6_12
Type: CAZyme
Location: 9459 - 11522 (+)
Type: CAZyme
Location: 9459 - 11522 (+)
Gene ID: HRGMv2_2270_6_13
Type: TC
Location: 11485 - 13239 (+)
Type: TC
Location: 11485 - 13239 (+)
Gene ID: HRGMv2_2270_6_14
Type: TF
Location: 13242 - 14750 (+)
Type: TF
Location: 13242 - 14750 (+)
Gene ID: HRGMv2_2270_6_15
Type: STP
Location: 14916 - 16301 (+)
Type: STP
Location: 14916 - 16301 (+)
Gene ID: HRGMv2_2270_6_16
Type: TC
Location: 16404 - 17297 (+)
Type: TC
Location: 16404 - 17297 (+)
Gene ID: HRGMv2_2270_6_17
Type: TC
Location: 17301 - 18152 (+)
Type: TC
Location: 17301 - 18152 (+)
Gene ID: HRGMv2_2270_6_18
Type: CAZyme
Location: 18177 - 23996 (+)
Type: CAZyme
Location: 18177 - 23996 (+)
Gene ID: HRGMv2_2270_6_19
Type: pfam
Location: 24210 - 24566 (+)
Type: pfam
Location: 24210 - 24566 (+)
Gene ID: HRGMv2_2270_6_20
Type: TC
Location: 24597 - 26645 (+)
Type: TC
Location: 24597 - 26645 (+)
Gene ID: HRGMv2_2270_6_21
Type: STP
Location: 26871 - 28340 (+)
Type: STP
Location: 26871 - 28340 (+)
Gene ID: HRGMv2_2270_6_22
Type: TC
Location: 28362 - 29297 (+)
Type: TC
Location: 28362 - 29297 (+)
Gene ID: HRGMv2_2270_6_23
Type: TC
Location: 29297 - 30136 (+)
Type: TC
Location: 29297 - 30136 (+)
Gene ID: HRGMv2_2270_6_24
Type: CAZyme
Location: 30205 - 31305 (+)
Type: CAZyme
Location: 30205 - 31305 (+)
Gene ID: HRGMv2_2270_6_25
Type: pfam
Location: 31307 - 32203 (+)
Type: pfam
Location: 31307 - 32203 (+)
Gene ID: HRGMv2_2270_6_26
Type: CAZyme
Location: 32224 - 33294 (+)
Type: CAZyme
Location: 32224 - 33294 (+)
Gene ID: HRGMv2_2270_6_27
Type: TC
Location: 33324 - 35009 (+)
Type: TC
Location: 33324 - 35009 (+)
Gene ID: HRGMv2_2270_6_28
Type: TF
Location: 35006 - 36535 (+)
Type: TF
Location: 35006 - 36535 (+)
Gene ID: HRGMv2_2270_6_29
Type: pfam
Location: 36558 - 37166 (-)
Type: pfam
Location: 36558 - 37166 (-)
Gene ID: HRGMv2_2270_6_30
Type: CAZyme
Location: 37504 - 38628 (-)
Type: CAZyme
Location: 37504 - 38628 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Hungatella
Species
Hungatella effluvii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.