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Cluster: HRGMv2_2270_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2270_5 HRGMv2_2270_5_77 87383 88927 - GH13_44
TF HRGMv2_2270_5 HRGMv2_2270_5_78 89098 90036 + HTH_AraC | HTH_AraC
TC HRGMv2_2270_5 HRGMv2_2270_5_79 90075 91124 + 3.A.1.15.3
TC HRGMv2_2270_5 HRGMv2_2270_5_80 91125 91832 + 3.A.1.15.1
TC HRGMv2_2270_5 HRGMv2_2270_5_81 91832 92701 + 3.A.1.15.5
TC HRGMv2_2270_5 HRGMv2_2270_5_82 92709 94064 + 2.A.38.4.1
TC HRGMv2_2270_5 HRGMv2_2270_5_83 94138 94791 + 2.A.38.4.4
TF HRGMv2_2270_5 HRGMv2_2270_5_84 94961 95833 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2270_5 HRGMv2_2270_5_85 95921 97843 + GH154
CAZyme HRGMv2_2270_5 HRGMv2_2270_5_86 97872 99008 + GH88
STP HRGMv2_2270_5 HRGMv2_2270_5_87 99267 100556 + SBP_bac_1
TC HRGMv2_2270_5 HRGMv2_2270_5_88 100575 101495 + 3.A.1.1.11
TC HRGMv2_2270_5 HRGMv2_2270_5_89 101508 102356 + 3.A.1.1.36
pfam HRGMv2_2270_5 HRGMv2_2270_5_90 102387 103274 + AP_endonuc_2
CAZyme HRGMv2_2270_5 HRGMv2_2270_5_91 103267 104940 + GH2
STP HRGMv2_2270_5 HRGMv2_2270_5_92 105173 105385 + FeoA
STP HRGMv2_2270_5 HRGMv2_2270_5_93 105401 105622 + FeoA
TC HRGMv2_2270_5 HRGMv2_2270_5_94 105699 107855 + 9.A.8.1.6
Gene ID: HRGMv2_2270_5_77
Type: CAZyme
Location: 87383 - 88927 (-)
Gene ID: HRGMv2_2270_5_78
Type: TF
Location: 89098 - 90036 (+)
Gene ID: HRGMv2_2270_5_79
Type: TC
Location: 90075 - 91124 (+)
Gene ID: HRGMv2_2270_5_80
Type: TC
Location: 91125 - 91832 (+)
Gene ID: HRGMv2_2270_5_81
Type: TC
Location: 91832 - 92701 (+)
Gene ID: HRGMv2_2270_5_82
Type: TC
Location: 92709 - 94064 (+)
Gene ID: HRGMv2_2270_5_83
Type: TC
Location: 94138 - 94791 (+)
Gene ID: HRGMv2_2270_5_84
Type: TF
Location: 94961 - 95833 (-)
Gene ID: HRGMv2_2270_5_85
Type: CAZyme
Location: 95921 - 97843 (+)
Gene ID: HRGMv2_2270_5_86
Type: CAZyme
Location: 97872 - 99008 (+)
Gene ID: HRGMv2_2270_5_87
Type: STP
Location: 99267 - 100556 (+)
Gene ID: HRGMv2_2270_5_88
Type: TC
Location: 100575 - 101495 (+)
Gene ID: HRGMv2_2270_5_89
Type: TC
Location: 101508 - 102356 (+)
Gene ID: HRGMv2_2270_5_90
Type: pfam
Location: 102387 - 103274 (+)
Gene ID: HRGMv2_2270_5_91
Type: CAZyme
Location: 103267 - 104940 (+)
Gene ID: HRGMv2_2270_5_92
Type: STP
Location: 105173 - 105385 (+)
Gene ID: HRGMv2_2270_5_93
Type: STP
Location: 105401 - 105622 (+)
Gene ID: HRGMv2_2270_5_94
Type: TC
Location: 105699 - 107855 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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