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Cluster: HRGMv2_2270_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2270_4 HRGMv2_2270_4_56 49204 49665 + 1.A.22.1.1
pfam HRGMv2_2270_4 HRGMv2_2270_4_57 49783 50775 + PMSR | SelR
CAZyme HRGMv2_2270_4 HRGMv2_2270_4_58 50951 52648 - GH13_31
pfam HRGMv2_2270_4 HRGMv2_2270_4_59 52912 54117 + F420_ligase
TF HRGMv2_2270_4 HRGMv2_2270_4_60 54291 55121 - MerR
TC HRGMv2_2270_4 HRGMv2_2270_4_61 55244 55993 - 3.A.1.17.5
TC HRGMv2_2270_4 HRGMv2_2270_4_62 56005 56784 - 3.A.1.16.2
TC HRGMv2_2270_4 HRGMv2_2270_4_63 56760 57557 - 3.A.1.17.1
TC HRGMv2_2270_4 HRGMv2_2270_4_64 57559 58344 - 3.A.1.17.1
Gene ID: HRGMv2_2270_4_56
Type: TC
Location: 49204 - 49665 (+)
Gene ID: HRGMv2_2270_4_57
Type: pfam
Location: 49783 - 50775 (+)
Gene ID: HRGMv2_2270_4_58
Type: CAZyme
Location: 50951 - 52648 (-)
Gene ID: HRGMv2_2270_4_59
Type: pfam
Location: 52912 - 54117 (+)
Gene ID: HRGMv2_2270_4_60
Type: TF
Location: 54291 - 55121 (-)
Gene ID: HRGMv2_2270_4_61
Type: TC
Location: 55244 - 55993 (-)
Gene ID: HRGMv2_2270_4_62
Type: TC
Location: 56005 - 56784 (-)
Gene ID: HRGMv2_2270_4_63
Type: TC
Location: 56760 - 57557 (-)
Gene ID: HRGMv2_2270_4_64
Type: TC
Location: 57559 - 58344 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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