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Cluster: HRGMv2_2270_CGC115

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2270_60 HRGMv2_2270_60_3 3535 5310 - 3.A.1.106.3
TC HRGMv2_2270_60 HRGMv2_2270_60_4 5301 7028 - 3.A.1.106.3
pfam HRGMv2_2270_60 HRGMv2_2270_60_5 7439 8386 - DUF5688
CAZyme HRGMv2_2270_60 HRGMv2_2270_60_6 8820 11972 - GH2
TC HRGMv2_2270_60 HRGMv2_2270_60_7 12056 12889 - 3.A.1.1.18
TC HRGMv2_2270_60 HRGMv2_2270_60_8 12886 13782 - 3.A.1.1.11
STP HRGMv2_2270_60 HRGMv2_2270_60_9 13875 15263 - SBP_bac_1
TF HRGMv2_2270_60 HRGMv2_2270_60_10 15478 17034 - HTH_AraC | HTH_AraC
TC HRGMv2_2270_60 HRGMv2_2270_60_11 17031 18806 - 8.A.59.2.1
TF HRGMv2_2270_60 HRGMv2_2270_60_12 18876 19640 - GntR
TC HRGMv2_2270_60 HRGMv2_2270_60_13 19996 21309 + 2.A.40.7.6
peptidase HRGMv2_2270_60 HRGMv2_2270_60_14 21321 22778 + M38.UNW
CAZyme HRGMv2_2270_60 HRGMv2_2270_60_15 22848 24560 - GH154
CAZyme HRGMv2_2270_60 HRGMv2_2270_60_16 24579 25760 - GH88
CAZyme HRGMv2_2270_60 HRGMv2_2270_60_17 25729 27573 - GH2
TC HRGMv2_2270_60 HRGMv2_2270_60_18 27594 27992 - 3.A.1.1.34
Gene ID: HRGMv2_2270_60_3
Type: TC
Location: 3535 - 5310 (-)
Gene ID: HRGMv2_2270_60_4
Type: TC
Location: 5301 - 7028 (-)
Gene ID: HRGMv2_2270_60_5
Type: pfam
Location: 7439 - 8386 (-)
Gene ID: HRGMv2_2270_60_6
Type: CAZyme
Location: 8820 - 11972 (-)
Gene ID: HRGMv2_2270_60_7
Type: TC
Location: 12056 - 12889 (-)
Gene ID: HRGMv2_2270_60_8
Type: TC
Location: 12886 - 13782 (-)
Gene ID: HRGMv2_2270_60_9
Type: STP
Location: 13875 - 15263 (-)
Gene ID: HRGMv2_2270_60_10
Type: TF
Location: 15478 - 17034 (-)
Gene ID: HRGMv2_2270_60_11
Type: TC
Location: 17031 - 18806 (-)
Gene ID: HRGMv2_2270_60_12
Type: TF
Location: 18876 - 19640 (-)
Gene ID: HRGMv2_2270_60_13
Type: TC
Location: 19996 - 21309 (+)
Gene ID: HRGMv2_2270_60_14
Type: peptidase
Location: 21321 - 22778 (+)
Gene ID: HRGMv2_2270_60_15
Type: CAZyme
Location: 22848 - 24560 (-)
Gene ID: HRGMv2_2270_60_16
Type: CAZyme
Location: 24579 - 25760 (-)
Gene ID: HRGMv2_2270_60_17
Type: CAZyme
Location: 25729 - 27573 (-)
Gene ID: HRGMv2_2270_60_18
Type: TC
Location: 27594 - 27992 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2270_60_18 vegetarian > vegan 1.04956 0.03476

🧭 Explore Read Mapping of CGC

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