Cluster: HRGMv2_2270_CGC110
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2270
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2270_55 | HRGMv2_2270_55_3 | 1356 | 3170 | + | 8.A.59.2.1 |
| CAZyme | HRGMv2_2270_55 | HRGMv2_2270_55_4 | 3189 | 4571 | + | GH29 |
| pfam | HRGMv2_2270_55 | HRGMv2_2270_55_5 | 4658 | 6361 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | HRGMv2_2270_55 | HRGMv2_2270_55_6 | 6386 | 8866 | - | GH2 |
| CAZyme | HRGMv2_2270_55 | HRGMv2_2270_55_7 | 8878 | 10455 | - | GH13_23 |
| TF | HRGMv2_2270_55 | HRGMv2_2270_55_8 | 10456 | 11493 | - | LacI |
| CAZyme | HRGMv2_2270_55 | HRGMv2_2270_55_9 | 11516 | 12595 | - | GH130_4 |
| TC | HRGMv2_2270_55 | HRGMv2_2270_55_10 | 12617 | 13447 | - | 3.A.1.1.46 |
| TC | HRGMv2_2270_55 | HRGMv2_2270_55_11 | 13473 | 14372 | - | 3.A.1.1.28 |
| pfam | HRGMv2_2270_55 | HRGMv2_2270_55_12 | 14429 | 15835 | - | SBP_bac_8 |
| CAZyme | HRGMv2_2270_55 | HRGMv2_2270_55_13 | 15851 | 16798 | - | GT108 |
| TF | HRGMv2_2270_55 | HRGMv2_2270_55_14 | 17064 | 17999 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2270_55 | HRGMv2_2270_55_15 | 18171 | 19640 | + | GH4 |
Gene ID: HRGMv2_2270_55_3
Type: TC
Location: 1356 - 3170 (+)
Type: TC
Location: 1356 - 3170 (+)
Gene ID: HRGMv2_2270_55_4
Type: CAZyme
Location: 3189 - 4571 (+)
Type: CAZyme
Location: 3189 - 4571 (+)
Gene ID: HRGMv2_2270_55_5
Type: pfam
Location: 4658 - 6361 (-)
Type: pfam
Location: 4658 - 6361 (-)
Gene ID: HRGMv2_2270_55_6
Type: CAZyme
Location: 6386 - 8866 (-)
Type: CAZyme
Location: 6386 - 8866 (-)
Gene ID: HRGMv2_2270_55_7
Type: CAZyme
Location: 8878 - 10455 (-)
Type: CAZyme
Location: 8878 - 10455 (-)
Gene ID: HRGMv2_2270_55_8
Type: TF
Location: 10456 - 11493 (-)
Type: TF
Location: 10456 - 11493 (-)
Gene ID: HRGMv2_2270_55_9
Type: CAZyme
Location: 11516 - 12595 (-)
Type: CAZyme
Location: 11516 - 12595 (-)
Gene ID: HRGMv2_2270_55_10
Type: TC
Location: 12617 - 13447 (-)
Type: TC
Location: 12617 - 13447 (-)
Gene ID: HRGMv2_2270_55_11
Type: TC
Location: 13473 - 14372 (-)
Type: TC
Location: 13473 - 14372 (-)
Gene ID: HRGMv2_2270_55_12
Type: pfam
Location: 14429 - 15835 (-)
Type: pfam
Location: 14429 - 15835 (-)
Gene ID: HRGMv2_2270_55_13
Type: CAZyme
Location: 15851 - 16798 (-)
Type: CAZyme
Location: 15851 - 16798 (-)
Gene ID: HRGMv2_2270_55_14
Type: TF
Location: 17064 - 17999 (-)
Type: TF
Location: 17064 - 17999 (-)
Gene ID: HRGMv2_2270_55_15
Type: CAZyme
Location: 18171 - 19640 (+)
Type: CAZyme
Location: 18171 - 19640 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Hungatella
Species
Hungatella effluvii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.