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Cluster: HRGMv2_2270_CGC105

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2270_46 HRGMv2_2270_46_1 109 2049 - CE20 | CE20
TC HRGMv2_2270_46 HRGMv2_2270_46_2 2056 2940 - 3.A.1.1.11
TC HRGMv2_2270_46 HRGMv2_2270_46_3 2944 3816 - 3.A.1.1.11
TC HRGMv2_2270_46 HRGMv2_2270_46_4 3843 5252 - 3.A.1.1.11
CAZyme HRGMv2_2270_46 HRGMv2_2270_46_5 5275 7302 - GH67
CAZyme HRGMv2_2270_46 HRGMv2_2270_46_6 7262 8377 - GH177
TF HRGMv2_2270_46 HRGMv2_2270_46_7 8655 9494 + HTH_AraC | HTH_AraC
pfam HRGMv2_2270_46 HRGMv2_2270_46_8 9491 10417 + Epimerase
TC HRGMv2_2270_46 HRGMv2_2270_46_9 10533 11207 - 2.A.38.4.2
TC HRGMv2_2270_46 HRGMv2_2270_46_10 11220 12515 - 2.A.38.4.5
TC HRGMv2_2270_46 HRGMv2_2270_46_11 12824 14155 - 2.A.40.2.1
CAZyme HRGMv2_2270_46 HRGMv2_2270_46_12 14665 16461 - GH36
TC HRGMv2_2270_46 HRGMv2_2270_46_13 16507 17337 - 3.A.1.1.45
TC HRGMv2_2270_46 HRGMv2_2270_46_14 17337 18218 - 3.A.1.1.7
STP HRGMv2_2270_46 HRGMv2_2270_46_15 18312 19661 - SBP_bac_1
TC HRGMv2_2270_46 HRGMv2_2270_46_16 19843 21702 + 9.B.33.1.2
TF HRGMv2_2270_46 HRGMv2_2270_46_17 21695 23221 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2270_46 HRGMv2_2270_46_18 23397 24869 - GH29
Gene ID: HRGMv2_2270_46_1
Type: CAZyme
Location: 109 - 2049 (-)
Gene ID: HRGMv2_2270_46_2
Type: TC
Location: 2056 - 2940 (-)
Gene ID: HRGMv2_2270_46_3
Type: TC
Location: 2944 - 3816 (-)
Gene ID: HRGMv2_2270_46_4
Type: TC
Location: 3843 - 5252 (-)
Gene ID: HRGMv2_2270_46_5
Type: CAZyme
Location: 5275 - 7302 (-)
Gene ID: HRGMv2_2270_46_6
Type: CAZyme
Location: 7262 - 8377 (-)
Gene ID: HRGMv2_2270_46_7
Type: TF
Location: 8655 - 9494 (+)
Gene ID: HRGMv2_2270_46_8
Type: pfam
Location: 9491 - 10417 (+)
Gene ID: HRGMv2_2270_46_9
Type: TC
Location: 10533 - 11207 (-)
Gene ID: HRGMv2_2270_46_10
Type: TC
Location: 11220 - 12515 (-)
Gene ID: HRGMv2_2270_46_11
Type: TC
Location: 12824 - 14155 (-)
Gene ID: HRGMv2_2270_46_12
Type: CAZyme
Location: 14665 - 16461 (-)
Gene ID: HRGMv2_2270_46_13
Type: TC
Location: 16507 - 17337 (-)
Gene ID: HRGMv2_2270_46_14
Type: TC
Location: 17337 - 18218 (-)
Gene ID: HRGMv2_2270_46_15
Type: STP
Location: 18312 - 19661 (-)
Gene ID: HRGMv2_2270_46_16
Type: TC
Location: 19843 - 21702 (+)
Gene ID: HRGMv2_2270_46_17
Type: TF
Location: 21695 - 23221 (+)
Gene ID: HRGMv2_2270_46_18
Type: CAZyme
Location: 23397 - 24869 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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