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Cluster: HRGMv2_2270_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2270_1 HRGMv2_2270_1_5 3758 5293 - 8.A.59.4.1
NULL(UNKNOWN) HRGMv2_2270_1 HRGMv2_2270_1_6 5380 5676 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2270_1 HRGMv2_2270_1_7 5856 7328 + GntR | GntR
CAZyme HRGMv2_2270_1 HRGMv2_2270_1_8 7418 8860 - GH63
TC HRGMv2_2270_1 HRGMv2_2270_1_9 8890 9732 - 3.A.1.1.11
TC HRGMv2_2270_1 HRGMv2_2270_1_10 9750 10655 - 3.A.1.1.11
STP HRGMv2_2270_1 HRGMv2_2270_1_11 10896 12230 - SBP_bac_1
TF HRGMv2_2270_1 HRGMv2_2270_1_12 12398 13279 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2270_1 HRGMv2_2270_1_13 13276 14157 - GH43_17
Gene ID: HRGMv2_2270_1_5
Type: TC
Location: 3758 - 5293 (-)
Gene ID: HRGMv2_2270_1_6
Type:
Location: 5380 - 5676 (-)
Gene ID: HRGMv2_2270_1_7
Type: TF
Location: 5856 - 7328 (+)
Gene ID: HRGMv2_2270_1_8
Type: CAZyme
Location: 7418 - 8860 (-)
Gene ID: HRGMv2_2270_1_9
Type: TC
Location: 8890 - 9732 (-)
Gene ID: HRGMv2_2270_1_10
Type: TC
Location: 9750 - 10655 (-)
Gene ID: HRGMv2_2270_1_11
Type: STP
Location: 10896 - 12230 (-)
Gene ID: HRGMv2_2270_1_12
Type: TF
Location: 12398 - 13279 (-)
Gene ID: HRGMv2_2270_1_13
Type: CAZyme
Location: 13276 - 14157 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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