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Cluster: HRGMv2_2268_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2268_105 HRGMv2_2268_105_3 2028 3767 + 3.A.1.135.5
TC HRGMv2_2268_105 HRGMv2_2268_105_4 3783 5699 + 3.A.1.135.5
STP HRGMv2_2268_105 HRGMv2_2268_105_5 5733 6317 - Fer4 | Fer4
TF HRGMv2_2268_105 HRGMv2_2268_105_6 6451 7128 + 0038753
CAZyme HRGMv2_2268_105 HRGMv2_2268_105_7 7441 10017 + CBM13 | CBM13 | GH43_4
pfam HRGMv2_2268_105 HRGMv2_2268_105_8 10054 10719 + CxxCxxCC
TC HRGMv2_2268_105 HRGMv2_2268_105_9 10847 12322 + 3.A.18.1.1
CAZyme HRGMv2_2268_105 HRGMv2_2268_105_10 12294 15185 + GH43_4
TC HRGMv2_2268_105 HRGMv2_2268_105_11 15254 16009 - 3.A.1.3.6
TC HRGMv2_2268_105 HRGMv2_2268_105_12 16019 16666 - 3.A.1.3.15
STP HRGMv2_2268_105 HRGMv2_2268_105_13 16679 17482 - SBP_bac_3
TF HRGMv2_2268_105 HRGMv2_2268_105_14 17749 18282 + HTH_3
TC HRGMv2_2268_105 HRGMv2_2268_105_15 18317 19369 + 3.A.1.11.8
TC HRGMv2_2268_105 HRGMv2_2268_105_16 19421 20248 + 3.A.1.11.2
TC HRGMv2_2268_105 HRGMv2_2268_105_17 20252 21091 + 3.A.1.11.1
TC HRGMv2_2268_105 HRGMv2_2268_105_18 21109 22152 + 3.A.1.11.7
Gene ID: HRGMv2_2268_105_3
Type: TC
Location: 2028 - 3767 (+)
Gene ID: HRGMv2_2268_105_4
Type: TC
Location: 3783 - 5699 (+)
Gene ID: HRGMv2_2268_105_5
Type: STP
Location: 5733 - 6317 (-)
Gene ID: HRGMv2_2268_105_6
Type: TF
Location: 6451 - 7128 (+)
Gene ID: HRGMv2_2268_105_7
Type: CAZyme
Location: 7441 - 10017 (+)
Gene ID: HRGMv2_2268_105_8
Type: pfam
Location: 10054 - 10719 (+)
Gene ID: HRGMv2_2268_105_9
Type: TC
Location: 10847 - 12322 (+)
Gene ID: HRGMv2_2268_105_10
Type: CAZyme
Location: 12294 - 15185 (+)
Gene ID: HRGMv2_2268_105_11
Type: TC
Location: 15254 - 16009 (-)
Gene ID: HRGMv2_2268_105_12
Type: TC
Location: 16019 - 16666 (-)
Gene ID: HRGMv2_2268_105_13
Type: STP
Location: 16679 - 17482 (-)
Gene ID: HRGMv2_2268_105_14
Type: TF
Location: 17749 - 18282 (+)
Gene ID: HRGMv2_2268_105_15
Type: TC
Location: 18317 - 19369 (+)
Gene ID: HRGMv2_2268_105_16
Type: TC
Location: 19421 - 20248 (+)
Gene ID: HRGMv2_2268_105_17
Type: TC
Location: 20252 - 21091 (+)
Gene ID: HRGMv2_2268_105_18
Type: TC
Location: 21109 - 22152 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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