Cluster: HRGMv2_2268_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2268
- CGC Family ID: CGCFAM_03145
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2268_9 | HRGMv2_2268_9_1 | 3 | 1319 | - | GH32 |
| TC | HRGMv2_2268_9 | HRGMv2_2268_9_2 | 1438 | 2277 | - | 3.A.1.1.41 |
| TC | HRGMv2_2268_9 | HRGMv2_2268_9_3 | 2274 | 3158 | - | 3.A.1.1.20 |
| STP | HRGMv2_2268_9 | HRGMv2_2268_9_4 | 3233 | 4531 | - | SBP_bac_1 |
| TF | HRGMv2_2268_9 | HRGMv2_2268_9_5 | 4759 | 6372 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2268_9 | HRGMv2_2268_9_6 | 6372 | 8204 | - | 9.B.33.1.1 |
Gene ID: HRGMv2_2268_9_1
Type: CAZyme
Location: 3 - 1319 (-)
Type: CAZyme
Location: 3 - 1319 (-)
Gene ID: HRGMv2_2268_9_2
Type: TC
Location: 1438 - 2277 (-)
Type: TC
Location: 1438 - 2277 (-)
Gene ID: HRGMv2_2268_9_3
Type: TC
Location: 2274 - 3158 (-)
Type: TC
Location: 2274 - 3158 (-)
Gene ID: HRGMv2_2268_9_4
Type: STP
Location: 3233 - 4531 (-)
Type: STP
Location: 3233 - 4531 (-)
Gene ID: HRGMv2_2268_9_5
Type: TF
Location: 4759 - 6372 (-)
Type: TF
Location: 4759 - 6372 (-)
Gene ID: HRGMv2_2268_9_6
Type: TC
Location: 6372 - 8204 (-)
Type: TC
Location: 6372 - 8204 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
CAG-303
Species
CAG-303 sp000437755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.