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Cluster: HRGMv2_2263_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2263_18 HRGMv2_2263_18_28 38942 40045 - GH105
TC HRGMv2_2263_18 HRGMv2_2263_18_29 40058 40876 - 3.A.1.15.15
TC HRGMv2_2263_18 HRGMv2_2263_18_30 40869 41669 - 3.A.1.15.14
TC HRGMv2_2263_18 HRGMv2_2263_18_31 41669 42724 - 3.A.1.15.3
STP HRGMv2_2263_18 HRGMv2_2263_18_32 42948 45242 - EAL | GGDEF
TC HRGMv2_2263_18 HRGMv2_2263_18_33 45369 46235 - 3.A.1.9.1
TC HRGMv2_2263_18 HRGMv2_2263_18_34 46259 47113 - 3.A.1.24.4
TC HRGMv2_2263_18 HRGMv2_2263_18_35 47125 47892 - 3.A.1.9.2
pfam HRGMv2_2263_18 HRGMv2_2263_18_36 48005 49144 - Phosphonate-bd
CAZyme HRGMv2_2263_18 HRGMv2_2263_18_37 49299 50834 - GH28
TC HRGMv2_2263_18 HRGMv2_2263_18_38 51041 51826 - 2.A.5.5.2
NULL(UNKNOWN) HRGMv2_2263_18 HRGMv2_2263_18_39 51823 51951 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2263_18 HRGMv2_2263_18_40 52159 53814 - 3.A.18.1.1
STP HRGMv2_2263_18 HRGMv2_2263_18_41 53845 55185 - GAF | GGDEF
TC HRGMv2_2263_18 HRGMv2_2263_18_42 55276 57336 - 3.A.1.134.9
TC HRGMv2_2263_18 HRGMv2_2263_18_43 57357 58127 - 3.A.1.134.4
Gene ID: HRGMv2_2263_18_28
Type: CAZyme
Location: 38942 - 40045 (-)
Gene ID: HRGMv2_2263_18_29
Type: TC
Location: 40058 - 40876 (-)
Gene ID: HRGMv2_2263_18_30
Type: TC
Location: 40869 - 41669 (-)
Gene ID: HRGMv2_2263_18_31
Type: TC
Location: 41669 - 42724 (-)
Gene ID: HRGMv2_2263_18_32
Type: STP
Location: 42948 - 45242 (-)
Gene ID: HRGMv2_2263_18_33
Type: TC
Location: 45369 - 46235 (-)
Gene ID: HRGMv2_2263_18_34
Type: TC
Location: 46259 - 47113 (-)
Gene ID: HRGMv2_2263_18_35
Type: TC
Location: 47125 - 47892 (-)
Gene ID: HRGMv2_2263_18_36
Type: pfam
Location: 48005 - 49144 (-)
Gene ID: HRGMv2_2263_18_37
Type: CAZyme
Location: 49299 - 50834 (-)
Gene ID: HRGMv2_2263_18_38
Type: TC
Location: 51041 - 51826 (-)
Gene ID: HRGMv2_2263_18_39
Type:
Location: 51823 - 51951 (-)
Gene ID: HRGMv2_2263_18_40
Type: TC
Location: 52159 - 53814 (-)
Gene ID: HRGMv2_2263_18_41
Type: STP
Location: 53845 - 55185 (-)
Gene ID: HRGMv2_2263_18_42
Type: TC
Location: 55276 - 57336 (-)
Gene ID: HRGMv2_2263_18_43
Type: TC
Location: 57357 - 58127 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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