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Cluster: HRGMv2_2263_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2263_17 HRGMv2_2263_17_17 24054 26018 - CE12
TF HRGMv2_2263_17 HRGMv2_2263_17_18 26598 27521 - HTH_AraC | HTH_AraC
TC HRGMv2_2263_17 HRGMv2_2263_17_19 27856 28815 + 3.A.1.1.10
TC HRGMv2_2263_17 HRGMv2_2263_17_20 28829 29755 + 3.A.1.1.29
NULL(UNKNOWN) HRGMv2_2263_17 HRGMv2_2263_17_21 29864 31609 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2263_17 HRGMv2_2263_17_22 31773 32825 + GH105
CAZyme HRGMv2_2263_17 HRGMv2_2263_17_23 32854 35001 + GH112
pfam HRGMv2_2263_17 HRGMv2_2263_17_24 35169 35597 + HIT
TC HRGMv2_2263_17 HRGMv2_2263_17_25 35653 37005 + 3.A.24.1.1
pfam HRGMv2_2263_17 HRGMv2_2263_17_26 37142 38320 + FKBP_C | Trigger_C
NULL(UNKNOWN) HRGMv2_2263_17 HRGMv2_2263_17_27 38507 39973 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2263_17 HRGMv2_2263_17_28 39991 41148 + 2.A.4.7.4
NULL(UNKNOWN) HRGMv2_2263_17 HRGMv2_2263_17_29 41304 41672 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2263_17 HRGMv2_2263_17_30 41751 41918 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2263_17 HRGMv2_2263_17_31 42010 43122 - 2.A.45.2.6
NULL(UNKNOWN) HRGMv2_2263_17 HRGMv2_2263_17_32 43128 43397 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2263_17 HRGMv2_2263_17_33 43786 44814 + 9.A.23.1.1
Gene ID: HRGMv2_2263_17_17
Type: CAZyme
Location: 24054 - 26018 (-)
Gene ID: HRGMv2_2263_17_18
Type: TF
Location: 26598 - 27521 (-)
Gene ID: HRGMv2_2263_17_19
Type: TC
Location: 27856 - 28815 (+)
Gene ID: HRGMv2_2263_17_20
Type: TC
Location: 28829 - 29755 (+)
Gene ID: HRGMv2_2263_17_21
Type:
Location: 29864 - 31609 (+)
Gene ID: HRGMv2_2263_17_22
Type: CAZyme
Location: 31773 - 32825 (+)
Gene ID: HRGMv2_2263_17_23
Type: CAZyme
Location: 32854 - 35001 (+)
Gene ID: HRGMv2_2263_17_24
Type: pfam
Location: 35169 - 35597 (+)
Gene ID: HRGMv2_2263_17_25
Type: TC
Location: 35653 - 37005 (+)
Gene ID: HRGMv2_2263_17_26
Type: pfam
Location: 37142 - 38320 (+)
Gene ID: HRGMv2_2263_17_27
Type:
Location: 38507 - 39973 (+)
Gene ID: HRGMv2_2263_17_28
Type: TC
Location: 39991 - 41148 (+)
Gene ID: HRGMv2_2263_17_29
Type:
Location: 41304 - 41672 (+)
Gene ID: HRGMv2_2263_17_30
Type:
Location: 41751 - 41918 (+)
Gene ID: HRGMv2_2263_17_31
Type: TC
Location: 42010 - 43122 (-)
Gene ID: HRGMv2_2263_17_32
Type:
Location: 43128 - 43397 (-)
Gene ID: HRGMv2_2263_17_33
Type: TC
Location: 43786 - 44814 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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