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Cluster: HRGMv2_2263_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2263_15 HRGMv2_2263_15_11 11998 13902 + 4.A.2.1.4
STP HRGMv2_2263_15 HRGMv2_2263_15_12 14145 14402 + PTS-HPr
TC HRGMv2_2263_15 HRGMv2_2263_15_13 14568 16196 + 8.A.7.1.1
TF HRGMv2_2263_15 HRGMv2_2263_15_14 16252 17013 + HTH_DeoR
CAZyme HRGMv2_2263_15 HRGMv2_2263_15_15 17059 18540 - GH29
STP HRGMv2_2263_15 HRGMv2_2263_15_16 18694 19392 + AraC_binding
pfam HRGMv2_2263_15 HRGMv2_2263_15_17 20107 20889 + DNA_alkylation
TC HRGMv2_2263_15 HRGMv2_2263_15_18 21163 22422 + 8.A.59.4.2
pfam HRGMv2_2263_15 HRGMv2_2263_15_19 22539 22967 + SseB
pfam HRGMv2_2263_15 HRGMv2_2263_15_20 22984 23586 + Hydrolase | HAD_2
TC HRGMv2_2263_15 HRGMv2_2263_15_21 23778 25124 + 2.A.66.1.7
Gene ID: HRGMv2_2263_15_11
Type: TC
Location: 11998 - 13902 (+)
Gene ID: HRGMv2_2263_15_12
Type: STP
Location: 14145 - 14402 (+)
Gene ID: HRGMv2_2263_15_13
Type: TC
Location: 14568 - 16196 (+)
Gene ID: HRGMv2_2263_15_14
Type: TF
Location: 16252 - 17013 (+)
Gene ID: HRGMv2_2263_15_15
Type: CAZyme
Location: 17059 - 18540 (-)
Gene ID: HRGMv2_2263_15_16
Type: STP
Location: 18694 - 19392 (+)
Gene ID: HRGMv2_2263_15_17
Type: pfam
Location: 20107 - 20889 (+)
Gene ID: HRGMv2_2263_15_18
Type: TC
Location: 21163 - 22422 (+)
Gene ID: HRGMv2_2263_15_19
Type: pfam
Location: 22539 - 22967 (+)
Gene ID: HRGMv2_2263_15_20
Type: pfam
Location: 22984 - 23586 (+)
Gene ID: HRGMv2_2263_15_21
Type: TC
Location: 23778 - 25124 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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