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Cluster: HRGMv2_2263_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2263_10 HRGMv2_2263_10_37 35861 37171 + CE17
TF HRGMv2_2263_10 HRGMv2_2263_10_38 37174 38094 - HTH_AraC
CAZyme HRGMv2_2263_10 HRGMv2_2263_10_39 38343 40361 - GH133
CAZyme HRGMv2_2263_10 HRGMv2_2263_10_40 40751 42289 + CBM35 | GH26
TC HRGMv2_2263_10 HRGMv2_2263_10_41 42496 43257 + 9.B.28.1.8
STP HRGMv2_2263_10 HRGMv2_2263_10_42 43254 46244 + SBP_bac_1
TC HRGMv2_2263_10 HRGMv2_2263_10_43 46261 47208 + 3.A.1.1.11
TC HRGMv2_2263_10 HRGMv2_2263_10_44 47205 48098 + 3.A.1.1.39
Gene ID: HRGMv2_2263_10_37
Type: CAZyme
Location: 35861 - 37171 (+)
Gene ID: HRGMv2_2263_10_38
Type: TF
Location: 37174 - 38094 (-)
Gene ID: HRGMv2_2263_10_39
Type: CAZyme
Location: 38343 - 40361 (-)
Gene ID: HRGMv2_2263_10_40
Type: CAZyme
Location: 40751 - 42289 (+)
Gene ID: HRGMv2_2263_10_41
Type: TC
Location: 42496 - 43257 (+)
Gene ID: HRGMv2_2263_10_42
Type: STP
Location: 43254 - 46244 (+)
Gene ID: HRGMv2_2263_10_43
Type: TC
Location: 46261 - 47208 (+)
Gene ID: HRGMv2_2263_10_44
Type: TC
Location: 47205 - 48098 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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