Cluster: HRGMv2_2263_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2263
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2263_4 | HRGMv2_2263_4_19 | 19065 | 20153 | + | GH53 |
| TF | HRGMv2_2263_4 | HRGMv2_2263_4_20 | 20288 | 21295 | - | LacI |
| pfam | HRGMv2_2263_4 | HRGMv2_2263_4_21 | 21639 | 22985 | + | SBP_bac_8 |
| TC | HRGMv2_2263_4 | HRGMv2_2263_4_22 | 23182 | 24561 | + | 3.A.1.1.27 |
| TC | HRGMv2_2263_4 | HRGMv2_2263_4_23 | 24561 | 25430 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_2263_4 | HRGMv2_2263_4_24 | 25528 | 27153 | + | GH13_36 |
| CAZyme | HRGMv2_2263_4 | HRGMv2_2263_4_25 | 27171 | 28649 | + | GH77 |
Gene ID: HRGMv2_2263_4_19
Type: CAZyme
Location: 19065 - 20153 (+)
Type: CAZyme
Location: 19065 - 20153 (+)
Gene ID: HRGMv2_2263_4_20
Type: TF
Location: 20288 - 21295 (-)
Type: TF
Location: 20288 - 21295 (-)
Gene ID: HRGMv2_2263_4_21
Type: pfam
Location: 21639 - 22985 (+)
Type: pfam
Location: 21639 - 22985 (+)
Gene ID: HRGMv2_2263_4_22
Type: TC
Location: 23182 - 24561 (+)
Type: TC
Location: 23182 - 24561 (+)
Gene ID: HRGMv2_2263_4_23
Type: TC
Location: 24561 - 25430 (+)
Type: TC
Location: 24561 - 25430 (+)
Gene ID: HRGMv2_2263_4_24
Type: CAZyme
Location: 25528 - 27153 (+)
Type: CAZyme
Location: 25528 - 27153 (+)
Gene ID: HRGMv2_2263_4_25
Type: CAZyme
Location: 27171 - 28649 (+)
Type: CAZyme
Location: 27171 - 28649 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
CAG-882
Species
CAG-882 sp000435595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.