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Cluster: HRGMv2_2263_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2263_2 HRGMv2_2263_2_186 223827 224852 - 3.A.1.2.3
STP HRGMv2_2263_2 HRGMv2_2263_2_187 224883 225860 - Peripla_BP_1
TC HRGMv2_2263_2 HRGMv2_2263_2_188 225847 227679 - 8.A.59.2.1
TF HRGMv2_2263_2 HRGMv2_2263_2_189 227676 229286 - HTH_AraC | HTH_AraC
TC HRGMv2_2263_2 HRGMv2_2263_2_190 229423 231075 - 3.A.1.2.3
TC HRGMv2_2263_2 HRGMv2_2263_2_191 231096 232604 - 3.A.1.2.3
pfam HRGMv2_2263_2 HRGMv2_2263_2_192 232685 233938 - Peripla_BP_4 | Peripla_BP_7
CAZyme HRGMv2_2263_2 HRGMv2_2263_2_193 234299 236017 - CBM34 | GH13_20
TC HRGMv2_2263_2 HRGMv2_2263_2_194 236306 237643 - 2.A.66.1.33
Gene ID: HRGMv2_2263_2_186
Type: TC
Location: 223827 - 224852 (-)
Gene ID: HRGMv2_2263_2_187
Type: STP
Location: 224883 - 225860 (-)
Gene ID: HRGMv2_2263_2_188
Type: TC
Location: 225847 - 227679 (-)
Gene ID: HRGMv2_2263_2_189
Type: TF
Location: 227676 - 229286 (-)
Gene ID: HRGMv2_2263_2_190
Type: TC
Location: 229423 - 231075 (-)
Gene ID: HRGMv2_2263_2_191
Type: TC
Location: 231096 - 232604 (-)
Gene ID: HRGMv2_2263_2_192
Type: pfam
Location: 232685 - 233938 (-)
Gene ID: HRGMv2_2263_2_193
Type: CAZyme
Location: 234299 - 236017 (-)
Gene ID: HRGMv2_2263_2_194
Type: TC
Location: 236306 - 237643 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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