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Cluster: HRGMv2_2258_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2258_18 HRGMv2_2258_18_12 13170 14249 + GT2
CAZyme HRGMv2_2258_18 HRGMv2_2258_18_13 14246 16432 + GT2 | GT2
CAZyme HRGMv2_2258_18 HRGMv2_2258_18_14 16464 17351 + GT2
pfam HRGMv2_2258_18 HRGMv2_2258_18_15 17514 18881 + LytR_cpsA_psr
NULL(UNKNOWN) HRGMv2_2258_18 HRGMv2_2258_18_16 18925 19374 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2258_18 HRGMv2_2258_18_17 19806 21224 + 9.B.18.1.1
pfam HRGMv2_2258_18 HRGMv2_2258_18_18 21352 23343 + LytR_cpsA_psr
TC HRGMv2_2258_18 HRGMv2_2258_18_19 23612 24559 + 2.A.69.4.3
STP HRGMv2_2258_18 HRGMv2_2258_18_20 25009 25926 + PfkB
pfam HRGMv2_2258_18 HRGMv2_2258_18_21 26063 27172 + Bmp
TC HRGMv2_2258_18 HRGMv2_2258_18_22 27259 28785 + 3.A.1.2.17
TC HRGMv2_2258_18 HRGMv2_2258_18_23 28786 29928 + 3.A.1.2.12
TC HRGMv2_2258_18 HRGMv2_2258_18_24 29925 30860 + 3.A.1.2.17
Gene ID: HRGMv2_2258_18_12
Type: CAZyme
Location: 13170 - 14249 (+)
Gene ID: HRGMv2_2258_18_13
Type: CAZyme
Location: 14246 - 16432 (+)
Gene ID: HRGMv2_2258_18_14
Type: CAZyme
Location: 16464 - 17351 (+)
Gene ID: HRGMv2_2258_18_15
Type: pfam
Location: 17514 - 18881 (+)
Gene ID: HRGMv2_2258_18_16
Type:
Location: 18925 - 19374 (+)
Gene ID: HRGMv2_2258_18_17
Type: TC
Location: 19806 - 21224 (+)
Gene ID: HRGMv2_2258_18_18
Type: pfam
Location: 21352 - 23343 (+)
Gene ID: HRGMv2_2258_18_19
Type: TC
Location: 23612 - 24559 (+)
Gene ID: HRGMv2_2258_18_20
Type: STP
Location: 25009 - 25926 (+)
Gene ID: HRGMv2_2258_18_21
Type: pfam
Location: 26063 - 27172 (+)
Gene ID: HRGMv2_2258_18_22
Type: TC
Location: 27259 - 28785 (+)
Gene ID: HRGMv2_2258_18_23
Type: TC
Location: 28786 - 29928 (+)
Gene ID: HRGMv2_2258_18_24
Type: TC
Location: 29925 - 30860 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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