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Cluster: HRGMv2_2258_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2258_5 HRGMv2_2258_5_19 20280 21242 + 3.A.1.131.3
TC HRGMv2_2258_5 HRGMv2_2258_5_20 21220 22206 + 3.A.1.132.7
pfam HRGMv2_2258_5 HRGMv2_2258_5_21 22199 23032 + AP_endonuc_2
NULL(UNKNOWN) HRGMv2_2258_5 HRGMv2_2258_5_22 23139 23621 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2258_5 HRGMv2_2258_5_23 23713 25143 + 2.A.40.2.1
CAZyme HRGMv2_2258_5 HRGMv2_2258_5_24 25226 25849 + CE4
STP HRGMv2_2258_5 HRGMv2_2258_5_25 26065 26871 + Response_reg | Spo0A_C
pfam HRGMv2_2258_5 HRGMv2_2258_5_26 27057 27287 + Glyco_transf_5
CAZyme HRGMv2_2258_5 HRGMv2_2258_5_27 27313 28569 + GT5
Gene ID: HRGMv2_2258_5_19
Type: TC
Location: 20280 - 21242 (+)
Gene ID: HRGMv2_2258_5_20
Type: TC
Location: 21220 - 22206 (+)
Gene ID: HRGMv2_2258_5_21
Type: pfam
Location: 22199 - 23032 (+)
Gene ID: HRGMv2_2258_5_22
Type:
Location: 23139 - 23621 (+)
Gene ID: HRGMv2_2258_5_23
Type: TC
Location: 23713 - 25143 (+)
Gene ID: HRGMv2_2258_5_24
Type: CAZyme
Location: 25226 - 25849 (+)
Gene ID: HRGMv2_2258_5_25
Type: STP
Location: 26065 - 26871 (+)
Gene ID: HRGMv2_2258_5_26
Type: pfam
Location: 27057 - 27287 (+)
Gene ID: HRGMv2_2258_5_27
Type: CAZyme
Location: 27313 - 28569 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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