Cluster: HRGMv2_2258_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2258
- CGC Family ID: CGCFAM_00160
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2258_49 | HRGMv2_2258_49_10 | 8982 | 10715 | + | 3.A.1.135.5 |
| TC | HRGMv2_2258_49 | HRGMv2_2258_49_11 | 10705 | 12597 | + | 3.A.1.135.5 |
| TF | HRGMv2_2258_49 | HRGMv2_2258_49_12 | 12707 | 13429 | - | GntR |
| TC | HRGMv2_2258_49 | HRGMv2_2258_49_13 | 13707 | 15686 | + | 4.A.1.2.13 |
| CAZyme | HRGMv2_2258_49 | HRGMv2_2258_49_14 | 15712 | 17385 | + | GH13_29 |
Gene ID: HRGMv2_2258_49_10
Type: TC
Location: 8982 - 10715 (+)
Type: TC
Location: 8982 - 10715 (+)
Gene ID: HRGMv2_2258_49_11
Type: TC
Location: 10705 - 12597 (+)
Type: TC
Location: 10705 - 12597 (+)
Gene ID: HRGMv2_2258_49_12
Type: TF
Location: 12707 - 13429 (-)
Type: TF
Location: 12707 - 13429 (-)
Gene ID: HRGMv2_2258_49_13
Type: TC
Location: 13707 - 15686 (+)
Type: TC
Location: 13707 - 15686 (+)
Gene ID: HRGMv2_2258_49_14
Type: CAZyme
Location: 15712 - 17385 (+)
Type: CAZyme
Location: 15712 - 17385 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Otoolea
Species
Otoolea sp019423835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.