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Cluster: HRGMv2_2248_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2248_3 HRGMv2_2248_3_22 27439 28086 + 1.A.62.2.1
pfam HRGMv2_2248_3 HRGMv2_2248_3_23 28210 29703 + LytR_cpsA_psr
TC HRGMv2_2248_3 HRGMv2_2248_3_24 29732 31687 + 9.B.18.2.1
pfam HRGMv2_2248_3 HRGMv2_2248_3_25 31699 32901 + Aminotran_1_2 | DegT_DnrJ_EryC1
TC HRGMv2_2248_3 HRGMv2_2248_3_26 32895 33578 + 9.B.18.1.3
CAZyme HRGMv2_2248_3 HRGMv2_2248_3_27 33594 34655 + GT2
pfam HRGMv2_2248_3 HRGMv2_2248_3_28 34652 35380 + IspD | NTP_transf_3
STP HRGMv2_2248_3 HRGMv2_2248_3_29 35460 37361 + SBP_bac_3
TC HRGMv2_2248_3 HRGMv2_2248_3_30 37769 38533 + 3.A.11.1.4
Gene ID: HRGMv2_2248_3_22
Type: TC
Location: 27439 - 28086 (+)
Gene ID: HRGMv2_2248_3_23
Type: pfam
Location: 28210 - 29703 (+)
Gene ID: HRGMv2_2248_3_24
Type: TC
Location: 29732 - 31687 (+)
Gene ID: HRGMv2_2248_3_25
Type: pfam
Location: 31699 - 32901 (+)
Gene ID: HRGMv2_2248_3_26
Type: TC
Location: 32895 - 33578 (+)
Gene ID: HRGMv2_2248_3_27
Type: CAZyme
Location: 33594 - 34655 (+)
Gene ID: HRGMv2_2248_3_28
Type: pfam
Location: 34652 - 35380 (+)
Gene ID: HRGMv2_2248_3_29
Type: STP
Location: 35460 - 37361 (+)
Gene ID: HRGMv2_2248_3_30
Type: TC
Location: 37769 - 38533 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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