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Cluster: HRGMv2_2248_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2248_35 HRGMv2_2248_35_2 483 3035 + 3.A.3.5.15
pfam HRGMv2_2248_35 HRGMv2_2248_35_3 3200 5878 + YfhO | YfhO
TC HRGMv2_2248_35 HRGMv2_2248_35_4 5944 6939 + 9.B.157.1.1
TC HRGMv2_2248_35 HRGMv2_2248_35_5 7030 9237 + 3.A.7.16.1
CAZyme HRGMv2_2248_35 HRGMv2_2248_35_6 9344 11152 + GH25
TC HRGMv2_2248_35 HRGMv2_2248_35_7 11183 12589 + 9.B.18.1.3
CAZyme HRGMv2_2248_35 HRGMv2_2248_35_8 12593 13348 + GT2
CAZyme HRGMv2_2248_35 HRGMv2_2248_35_9 13355 14293 + GT2
CAZyme HRGMv2_2248_35 HRGMv2_2248_35_10 14308 15585 + GT4
TC HRGMv2_2248_35 HRGMv2_2248_35_11 15560 16336 + 3.A.1.103.4
TC HRGMv2_2248_35 HRGMv2_2248_35_12 16337 17605 + 3.A.1.103.4
pfam HRGMv2_2248_35 HRGMv2_2248_35_13 17610 18683 + MetW | Methyltransf_11 | Methyltransf_23 | Methyltransf_25
NULL(UNKNOWN) HRGMv2_2248_35 HRGMv2_2248_35_14 18702 19154 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2248_35 HRGMv2_2248_35_15 19166 20359 + GT4
CAZyme HRGMv2_2248_35 HRGMv2_2248_35_16 20362 21438 + GT4
CAZyme HRGMv2_2248_35 HRGMv2_2248_35_17 21435 22625 + GT4
Gene ID: HRGMv2_2248_35_2
Type: TC
Location: 483 - 3035 (+)
Gene ID: HRGMv2_2248_35_3
Type: pfam
Location: 3200 - 5878 (+)
Gene ID: HRGMv2_2248_35_4
Type: TC
Location: 5944 - 6939 (+)
Gene ID: HRGMv2_2248_35_5
Type: TC
Location: 7030 - 9237 (+)
Gene ID: HRGMv2_2248_35_6
Type: CAZyme
Location: 9344 - 11152 (+)
Gene ID: HRGMv2_2248_35_7
Type: TC
Location: 11183 - 12589 (+)
Gene ID: HRGMv2_2248_35_8
Type: CAZyme
Location: 12593 - 13348 (+)
Gene ID: HRGMv2_2248_35_9
Type: CAZyme
Location: 13355 - 14293 (+)
Gene ID: HRGMv2_2248_35_10
Type: CAZyme
Location: 14308 - 15585 (+)
Gene ID: HRGMv2_2248_35_11
Type: TC
Location: 15560 - 16336 (+)
Gene ID: HRGMv2_2248_35_12
Type: TC
Location: 16337 - 17605 (+)
Gene ID: HRGMv2_2248_35_13
Type: pfam
Location: 17610 - 18683 (+)
Gene ID: HRGMv2_2248_35_14
Type:
Location: 18702 - 19154 (+)
Gene ID: HRGMv2_2248_35_15
Type: CAZyme
Location: 19166 - 20359 (+)
Gene ID: HRGMv2_2248_35_16
Type: CAZyme
Location: 20362 - 21438 (+)
Gene ID: HRGMv2_2248_35_17
Type: CAZyme
Location: 21435 - 22625 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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