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Cluster: HRGMv2_2248_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2248_30 HRGMv2_2248_30_3 2248 3684 + GT5
pfam HRGMv2_2248_30 HRGMv2_2248_30_4 3681 4625 + EamA | EamA
pfam HRGMv2_2248_30 HRGMv2_2248_30_5 4794 5477 + Ubie_methyltran | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_2248_30 HRGMv2_2248_30_6 5495 7084 + 3.A.1.5.20
TC HRGMv2_2248_30 HRGMv2_2248_30_7 7169 8116 + 3.A.1.5.20
TC HRGMv2_2248_30 HRGMv2_2248_30_8 8116 8943 + 3.A.1.5.20
TC HRGMv2_2248_30 HRGMv2_2248_30_9 8945 9937 + 3.A.1.5.2
TC HRGMv2_2248_30 HRGMv2_2248_30_10 9930 10694 + 3.A.1.5.32
Gene ID: HRGMv2_2248_30_3
Type: CAZyme
Location: 2248 - 3684 (+)
Gene ID: HRGMv2_2248_30_4
Type: pfam
Location: 3681 - 4625 (+)
Gene ID: HRGMv2_2248_30_5
Type: pfam
Location: 4794 - 5477 (+)
Gene ID: HRGMv2_2248_30_6
Type: TC
Location: 5495 - 7084 (+)
Gene ID: HRGMv2_2248_30_7
Type: TC
Location: 7169 - 8116 (+)
Gene ID: HRGMv2_2248_30_8
Type: TC
Location: 8116 - 8943 (+)
Gene ID: HRGMv2_2248_30_9
Type: TC
Location: 8945 - 9937 (+)
Gene ID: HRGMv2_2248_30_10
Type: TC
Location: 9930 - 10694 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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