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Cluster: HRGMv2_2248_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2248_28 HRGMv2_2248_28_3 2029 3186 + GH18
TF HRGMv2_2248_28 HRGMv2_2248_28_4 3242 3925 - Trans_reg_C
TC HRGMv2_2248_28 HRGMv2_2248_28_5 4011 5738 + 2.A.21.9.1
NULL(UNKNOWN) HRGMv2_2248_28 HRGMv2_2248_28_6 5887 6966 + NULL(UNKNOWN)
[View Structural Homologs]
sulfatase HRGMv2_2248_28 HRGMv2_2248_28_7 7019 8050 + S1_16
TC HRGMv2_2248_28 HRGMv2_2248_28_8 8059 9369 + 3.D.6.1.2
TC HRGMv2_2248_28 HRGMv2_2248_28_9 9366 10337 + 3.D.6.1.2
TC HRGMv2_2248_28 HRGMv2_2248_28_10 10334 10864 + 3.D.6.1.2
Gene ID: HRGMv2_2248_28_3
Type: CAZyme
Location: 2029 - 3186 (+)
Gene ID: HRGMv2_2248_28_4
Type: TF
Location: 3242 - 3925 (-)
Gene ID: HRGMv2_2248_28_5
Type: TC
Location: 4011 - 5738 (+)
Gene ID: HRGMv2_2248_28_6
Type:
Location: 5887 - 6966 (+)
Gene ID: HRGMv2_2248_28_7
Type: sulfatase
Location: 7019 - 8050 (+)
Gene ID: HRGMv2_2248_28_8
Type: TC
Location: 8059 - 9369 (+)
Gene ID: HRGMv2_2248_28_9
Type: TC
Location: 9366 - 10337 (+)
Gene ID: HRGMv2_2248_28_10
Type: TC
Location: 10334 - 10864 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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