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Cluster: HRGMv2_2248_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2248_22 HRGMv2_2248_22_1 81 3641 - 3.A.1.122.2
pfam HRGMv2_2248_22 HRGMv2_2248_22_2 3837 4145 + Thioredoxin | Thioredoxin_2 | Thioredoxin_9
TC HRGMv2_2248_22 HRGMv2_2248_22_3 4244 4969 - 3.A.1.3.25
TC HRGMv2_2248_22 HRGMv2_2248_22_4 4956 5669 - 3.A.1.3.15
TC HRGMv2_2248_22 HRGMv2_2248_22_5 5706 6518 - 3.A.1.3.5
pfam HRGMv2_2248_22 HRGMv2_2248_22_6 6614 7261 - UPF0029 | DUF1949
CAZyme HRGMv2_2248_22 HRGMv2_2248_22_7 7398 9974 + GT51
pfam HRGMv2_2248_22 HRGMv2_2248_22_8 10051 10407 - SpoVAC_SpoVAEB
STP HRGMv2_2248_22 HRGMv2_2248_22_9 10468 11640 - Aminotran_1_2
TC HRGMv2_2248_22 HRGMv2_2248_22_10 11702 12739 - 9.A.11.1.1
TC HRGMv2_2248_22 HRGMv2_2248_22_11 12754 13200 - 9.A.11.1.1
pfam HRGMv2_2248_22 HRGMv2_2248_22_12 13223 13687 - SpoVAB
TC HRGMv2_2248_22 HRGMv2_2248_22_13 13638 14267 - 9.A.11.1.1
Gene ID: HRGMv2_2248_22_1
Type: TC
Location: 81 - 3641 (-)
Gene ID: HRGMv2_2248_22_2
Type: pfam
Location: 3837 - 4145 (+)
Gene ID: HRGMv2_2248_22_3
Type: TC
Location: 4244 - 4969 (-)
Gene ID: HRGMv2_2248_22_4
Type: TC
Location: 4956 - 5669 (-)
Gene ID: HRGMv2_2248_22_5
Type: TC
Location: 5706 - 6518 (-)
Gene ID: HRGMv2_2248_22_6
Type: pfam
Location: 6614 - 7261 (-)
Gene ID: HRGMv2_2248_22_7
Type: CAZyme
Location: 7398 - 9974 (+)
Gene ID: HRGMv2_2248_22_8
Type: pfam
Location: 10051 - 10407 (-)
Gene ID: HRGMv2_2248_22_9
Type: STP
Location: 10468 - 11640 (-)
Gene ID: HRGMv2_2248_22_10
Type: TC
Location: 11702 - 12739 (-)
Gene ID: HRGMv2_2248_22_11
Type: TC
Location: 12754 - 13200 (-)
Gene ID: HRGMv2_2248_22_12
Type: pfam
Location: 13223 - 13687 (-)
Gene ID: HRGMv2_2248_22_13
Type: TC
Location: 13638 - 14267 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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