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Cluster: HRGMv2_2248_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2248_17 HRGMv2_2248_17_3 1274 2881 + 3.A.1.5.18
TC HRGMv2_2248_17 HRGMv2_2248_17_4 3052 3981 + 3.A.1.5.20
TC HRGMv2_2248_17 HRGMv2_2248_17_5 3998 4888 + 3.A.1.5.20
TC HRGMv2_2248_17 HRGMv2_2248_17_6 4900 5928 + 3.A.1.5.12
TC HRGMv2_2248_17 HRGMv2_2248_17_7 5930 6949 + 3.A.1.5.29
pfam HRGMv2_2248_17 HRGMv2_2248_17_8 6946 7398 + DUF386
pfam HRGMv2_2248_17 HRGMv2_2248_17_9 7438 8355 + DHDPS
CAZyme HRGMv2_2248_17 HRGMv2_2248_17_10 8386 9837 + GH165
CAZyme HRGMv2_2248_17 HRGMv2_2248_17_11 9837 10976 + CE9
TF HRGMv2_2248_17 HRGMv2_2248_17_12 11122 11793 + Trans_reg_C
STP HRGMv2_2248_17 HRGMv2_2248_17_13 11807 12796 + HATPase_c
TC HRGMv2_2248_17 HRGMv2_2248_17_14 12911 13675 + 3.A.1.134.4
TC HRGMv2_2248_17 HRGMv2_2248_17_15 13672 15705 + 3.A.1.134.4
CAZyme HRGMv2_2248_17 HRGMv2_2248_17_16 15748 16557 - CE4
TC HRGMv2_2248_17 HRGMv2_2248_17_17 16722 17207 + 2.A.115.2.14
Gene ID: HRGMv2_2248_17_3
Type: TC
Location: 1274 - 2881 (+)
Gene ID: HRGMv2_2248_17_4
Type: TC
Location: 3052 - 3981 (+)
Gene ID: HRGMv2_2248_17_5
Type: TC
Location: 3998 - 4888 (+)
Gene ID: HRGMv2_2248_17_6
Type: TC
Location: 4900 - 5928 (+)
Gene ID: HRGMv2_2248_17_7
Type: TC
Location: 5930 - 6949 (+)
Gene ID: HRGMv2_2248_17_8
Type: pfam
Location: 6946 - 7398 (+)
Gene ID: HRGMv2_2248_17_9
Type: pfam
Location: 7438 - 8355 (+)
Gene ID: HRGMv2_2248_17_10
Type: CAZyme
Location: 8386 - 9837 (+)
Gene ID: HRGMv2_2248_17_11
Type: CAZyme
Location: 9837 - 10976 (+)
Gene ID: HRGMv2_2248_17_12
Type: TF
Location: 11122 - 11793 (+)
Gene ID: HRGMv2_2248_17_13
Type: STP
Location: 11807 - 12796 (+)
Gene ID: HRGMv2_2248_17_14
Type: TC
Location: 12911 - 13675 (+)
Gene ID: HRGMv2_2248_17_15
Type: TC
Location: 13672 - 15705 (+)
Gene ID: HRGMv2_2248_17_16
Type: CAZyme
Location: 15748 - 16557 (-)
Gene ID: HRGMv2_2248_17_17
Type: TC
Location: 16722 - 17207 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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