Cluster: HRGMv2_2246_CGC4
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_2246
- CGC Family ID: CGCFAM_10003
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2246_8 | HRGMv2_2246_8_10 | 10493 | 11965 | - | 2.A.66.2.16 |
| pfam | HRGMv2_2246_8 | HRGMv2_2246_8_11 | 11980 | 12993 | - | Stealth_CR2 | Stealth_CR1 | Stealth_CR4 |
| CAZyme | HRGMv2_2246_8 | HRGMv2_2246_8_12 | 13032 | 14021 | - | GT2 |
| pfam | HRGMv2_2246_8 | HRGMv2_2246_8_13 | 14008 | 15054 | - | Acyl_transf_3 |
| CAZyme | HRGMv2_2246_8 | HRGMv2_2246_8_14 | 15047 | 16174 | - | GT4 |
| CAZyme | HRGMv2_2246_8 | HRGMv2_2246_8_15 | 16176 | 17120 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_2246_8 | HRGMv2_2246_8_16 | 17216 | 19264 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2246_8 | HRGMv2_2246_8_17 | 19265 | 21655 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_2246_8 | HRGMv2_2246_8_18 | 21652 | 22170 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2246_8 | HRGMv2_2246_8_19 | 22163 | 23218 | - | GT4 |
| TC | HRGMv2_2246_8 | HRGMv2_2246_8_20 | 23221 | 24561 | - | 3.A.1.103.4 |
| TC | HRGMv2_2246_8 | HRGMv2_2246_8_21 | 24561 | 25337 | - | 3.A.1.103.4 |
| peptidase | HRGMv2_2246_8 | HRGMv2_2246_8_22 | 25414 | 27501 | - | C01.UPA |
| CAZyme | HRGMv2_2246_8 | HRGMv2_2246_8_23 | 27537 | 29777 | - | GH5_2 |
| CAZyme | HRGMv2_2246_8 | HRGMv2_2246_8_24 | 29801 | 31609 | - | GH5_2 |
| peptidase | HRGMv2_2246_8 | HRGMv2_2246_8_25 | 31758 | 33797 | - | C01.UPA |
| CAZyme | HRGMv2_2246_8 | HRGMv2_2246_8_26 | 33897 | 35165 | - | GT4 |
Gene ID: HRGMv2_2246_8_10
Type: TC
Location: 10493 - 11965 (-)
Type: TC
Location: 10493 - 11965 (-)
Gene ID: HRGMv2_2246_8_11
Type: pfam
Location: 11980 - 12993 (-)
Type: pfam
Location: 11980 - 12993 (-)
Gene ID: HRGMv2_2246_8_12
Type: CAZyme
Location: 13032 - 14021 (-)
Type: CAZyme
Location: 13032 - 14021 (-)
Gene ID: HRGMv2_2246_8_13
Type: pfam
Location: 14008 - 15054 (-)
Type: pfam
Location: 14008 - 15054 (-)
Gene ID: HRGMv2_2246_8_14
Type: CAZyme
Location: 15047 - 16174 (-)
Type: CAZyme
Location: 15047 - 16174 (-)
Gene ID: HRGMv2_2246_8_15
Type: CAZyme
Location: 16176 - 17120 (-)
Type: CAZyme
Location: 16176 - 17120 (-)
Gene ID: HRGMv2_2246_8_16
Type:
Location: 17216 - 19264 (-)
Type:
Location: 17216 - 19264 (-)
Gene ID: HRGMv2_2246_8_17
Type: CAZyme
Location: 19265 - 21655 (-)
Type: CAZyme
Location: 19265 - 21655 (-)
Gene ID: HRGMv2_2246_8_18
Type:
Location: 21652 - 22170 (-)
Type:
Location: 21652 - 22170 (-)
Gene ID: HRGMv2_2246_8_19
Type: CAZyme
Location: 22163 - 23218 (-)
Type: CAZyme
Location: 22163 - 23218 (-)
Gene ID: HRGMv2_2246_8_20
Type: TC
Location: 23221 - 24561 (-)
Type: TC
Location: 23221 - 24561 (-)
Gene ID: HRGMv2_2246_8_21
Type: TC
Location: 24561 - 25337 (-)
Type: TC
Location: 24561 - 25337 (-)
Gene ID: HRGMv2_2246_8_22
Type: peptidase
Location: 25414 - 27501 (-)
Type: peptidase
Location: 25414 - 27501 (-)
Gene ID: HRGMv2_2246_8_23
Type: CAZyme
Location: 27537 - 29777 (-)
Type: CAZyme
Location: 27537 - 29777 (-)
Gene ID: HRGMv2_2246_8_24
Type: CAZyme
Location: 29801 - 31609 (-)
Type: CAZyme
Location: 29801 - 31609 (-)
Gene ID: HRGMv2_2246_8_25
Type: peptidase
Location: 31758 - 33797 (-)
Type: peptidase
Location: 31758 - 33797 (-)
Gene ID: HRGMv2_2246_8_26
Type: CAZyme
Location: 33897 - 35165 (-)
Type: CAZyme
Location: 33897 - 35165 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
CAG-632
Species
CAG-632 sp902464345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.