Cluster: HRGMv2_2246_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2246
- CGC Family ID: CGCFAM_04746
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2246_37 | HRGMv2_2246_37_2 | 1601 | 2512 | + | 3.A.1.1.28 |
| TC | HRGMv2_2246_37 | HRGMv2_2246_37_3 | 2514 | 3437 | + | 3.A.1.1.18 |
| CAZyme | HRGMv2_2246_37 | HRGMv2_2246_37_4 | 3457 | 4482 | + | GH130_2 |
| CAZyme | HRGMv2_2246_37 | HRGMv2_2246_37_5 | 4527 | 5705 | + | GH130_1 |
| CAZyme | HRGMv2_2246_37 | HRGMv2_2246_37_6 | 5816 | 7324 | + | CE20 |
| TC | HRGMv2_2246_37 | HRGMv2_2246_37_7 | 7346 | 9283 | + | 9.B.34.1.3 |
Gene ID: HRGMv2_2246_37_2
Type: TC
Location: 1601 - 2512 (+)
Type: TC
Location: 1601 - 2512 (+)
Gene ID: HRGMv2_2246_37_3
Type: TC
Location: 2514 - 3437 (+)
Type: TC
Location: 2514 - 3437 (+)
Gene ID: HRGMv2_2246_37_4
Type: CAZyme
Location: 3457 - 4482 (+)
Type: CAZyme
Location: 3457 - 4482 (+)
Gene ID: HRGMv2_2246_37_5
Type: CAZyme
Location: 4527 - 5705 (+)
Type: CAZyme
Location: 4527 - 5705 (+)
Gene ID: HRGMv2_2246_37_6
Type: CAZyme
Location: 5816 - 7324 (+)
Type: CAZyme
Location: 5816 - 7324 (+)
Gene ID: HRGMv2_2246_37_7
Type: TC
Location: 7346 - 9283 (+)
Type: TC
Location: 7346 - 9283 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
CAG-632
Species
CAG-632 sp902464345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2246_37_4 | vegetarian > omnivore | 1.09542 | 0.03477 |